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Platform GPL14132 Query DataSets for GPL14132
Status Public on Feb 02, 2012
Title febit Homo sapiens miRBase 15.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer febit biomed
Manufacture protocol MicroRNAs (miRNAs) are endogenous, non-coding RNAs that play a fundamental role in gene regulation and have critical functions across various biological processes. Pairing to mRNAs of protein-coding genes, they direct posttranscriptional repression by altering the stability or translational efficiency of their target mRNAs. Recent studies indicate that miRNAs are involved in the development of human malignancies, suggesting that they represent a promising new class of cancer biomarkers. Identifying miRNAs involved in specific cancers could provide useful diagnostic information, allow disease classification and reveal potential treatment targets. MPEA: On-Chip Labeling for Highest Sensitivity Enzymatic labeling assay requires minimal sample amount In addition to the standard hybridization of pre-labeled RNA, the microfluidic Geniom Biochip enables a highly sensitive enzymatic labeling protocol. MPEA benefits * Higher sensitivity and specificity * miRNA hybridization without preceding treatment like enrichment, PCR -based amplification or labeling eliminates potential bias * High discriminatory power * Minimal amount of sample RNA needed (more than or equal 20 ng total RNA) * Easy to use protocol for Geniom RT Analyzer The unique Microfluidic Primer Extension Assay (MPEA) uses unlabeled miRNAs for hybridization. In a second step, Klenow fragment of DNA polymerase I is added directly into the channels of the microfluidic chip, where the specific elongation of the bound miRNAs takes place. The method combines the specificity of a hybridization assay with the discriminatory power of an enzymatic extension and reduces the required sample amount to a minimum. Details provided at www.febit.com
 
 
Submission date Aug 10, 2011
Last update date Feb 02, 2012
Contact name Michael Georg Schrauder
E-mail(s) [email protected]
Organization name University Hospital Erlangen
Department Gynecology
Street address Universitätsstrasse 21-23
City Erlangen
ZIP/Postal code 91054
Country Germany
 
Samples (162) GSM775850, GSM775851, GSM775852, GSM775853, GSM775854, GSM775855 
Series (2)
GSE31309 miRNA expression profiling in early stage breast cancer
GSE56489 Prospective Evaluation of Whole Genome MicroRNA Expression Profiling in Childhood Acute Lymphoblastic Leukemia

Data table header descriptions
ID
ID_description Identifier in Sanger miRBase (http://microrna.sanger.ac.uk)
SEQUENCE nucleic miRNA sequence
miRNA_ID Identifier in Sanger miRBase 15 (http://microrna.sanger.ac.uk)

Data table
ID ID_description SEQUENCE miRNA_ID
1 hsa-let-7a UGAGGUAGUAGGUUGUAUAGUU hsa-let-7a
2 hsa-let-7a* CUAUACAAUCUACUGUCUUUC hsa-let-7a*
3 hsa-let-7a-2* CUGUACAGCCUCCUAGCUUUCC hsa-let-7a-2*
4 hsa-let-7b UGAGGUAGUAGGUUGUGUGGUU hsa-let-7b
5 hsa-let-7b* CUAUACAACCUACUGCCUUCCC hsa-let-7b*
6 hsa-let-7c UGAGGUAGUAGGUUGUAUGGUU hsa-let-7c
7 hsa-let-7c* UAGAGUUACACCCUGGGAGUUA hsa-let-7c*
8 hsa-let-7d AGAGGUAGUAGGUUGCAUAGUU hsa-let-7d
9 hsa-let-7d* CUAUACGACCUGCUGCCUUUCU hsa-let-7d*
10 hsa-let-7e UGAGGUAGGAGGUUGUAUAGUU hsa-let-7e
11 hsa-let-7e* CUAUACGGCCUCCUAGCUUUCC hsa-let-7e*
12 hsa-let-7f UGAGGUAGUAGAUUGUAUAGUU hsa-let-7f
13 hsa-let-7f-1* CUAUACAAUCUAUUGCCUUCCC hsa-let-7f-1*
14 hsa-let-7f-2* CUAUACAGUCUACUGUCUUUCC hsa-let-7f-2*
15 hsa-let-7g UGAGGUAGUAGUUUGUACAGUU hsa-let-7g
16 hsa-let-7g* CUGUACAGGCCACUGCCUUGC hsa-let-7g*
17 hsa-let-7i UGAGGUAGUAGUUUGUGCUGUU hsa-let-7i
18 hsa-let-7i* CUGCGCAAGCUACUGCCUUGCU hsa-let-7i*
19 hsa-miR-1 UGGAAUGUAAAGAAGUAUGUAU hsa-miR-1
20 hsa-miR-100 AACCCGUAGAUCCGAACUUGUG hsa-miR-100

Total number of rows: 1100

Table truncated, full table size 56 Kbytes.




Download family Format
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Supplementary data files not provided

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