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Status
Public on Apr 01, 2012
Title
Custom NimbleGen 12x135 Maize (4a.53) expression array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Zea mays Manufacturer
NimbleGen
Manufacture protocol
Standard NimbleGen synthesis
Description
3-4 long oligonucleotides were synthesized for each of the 32,540 genes in the FGS annotation of maize (4a.53)
Submission date
Jun 16, 2011
Last update date
Apr 01, 2012
Contact name
Nathan M Springer
E-mail(s)
[email protected] Phone
6126246241
Fax
6126251738
Organization name
University of Minnesota
Department
Plant Biology
Street address
1445 Gortner Ave
City
Saint Paul
State/province
MN
ZIP/Postal code
55108
Country
USA
Samples (94)
GSM743579 , GSM743580 , GSM743581 , GSM743582 , GSM743583 , GSM743584
GSM743585 ,
GSM743586 ,
GSM743587 ,
GSM743588 ,
GSM743589 ,
GSM743590 ,
GSM743591 ,
GSM743592 ,
GSM743593 ,
GSM743594 ,
GSM743595 ,
GSM743596 ,
GSM743597 ,
GSM743598 ,
GSM743599 ,
GSM743600 ,
GSM743601 ,
GSM743602 ,
GSM743603 ,
GSM743604 ,
GSM743605 ,
GSM743606 ,
GSM743607 ,
GSM743608 ,
GSM743609 ,
GSM743610 ,
GSM743611 ,
GSM743612 ,
GSM743613 ,
GSM743614 ,
GSM743615 ,
GSM743616 ,
GSM743617 ,
GSM743618 ,
GSM743619 ,
GSM743620 ,
GSM743621 ,
GSM743622 ,
GSM743623 ,
GSM743624 ,
GSM743625 ,
GSM743626 ,
GSM743627 ,
GSM743628 ,
GSM743629 ,
GSM743630 ,
GSM743631 ,
GSM743632 ,
GSM743633 ,
GSM743634 ,
GSM743635 ,
GSM743636 ,
GSM743637 ,
GSM743638 ,
GSM743639 ,
GSM743640 ,
GSM743641 ,
GSM743642 ,
GSM743643 ,
GSM743644 ,
GSM743645 ,
GSM743646 ,
GSM743647 ,
GSM743648 ,
GSM743649 ,
GSM743650 ,
GSM743651 ,
GSM743652 ,
GSM743653 ,
GSM743654 ,
GSM743655 ,
GSM743656 ,
GSM743657 ,
GSM743658 ,
GSM743659 ,
GSM743660 ,
GSM743661 ,
GSM743662 ,
GSM743663 ,
GSM743664 ,
GSM743665 ,
GSM743666 ,
GSM743667 ,
GSM743668 ,
GSM743669 ,
GSM743670 ,
GSM743671 ,
GSM743672 Series (1)
GSE30036 Reshaping of the maize transcriptome by domestication
Data table header descriptions ID Specifies the gene; this column will match with a gene ID in the .ndf file
PROBE_PAIRS Number of probes utilized for the gene
GENE_EXPR_OPTION Specifies whether gene is on forward or reverse strand
SPOT_ID FGS gene annotation of maize (4a.53)
Data table ID PROBE_PAIRS GENE_EXPR_OPTION SPOT_ID chr10:100098205-100100917
4
REV_GENES
GRMZM2G017164
chr10:100123370-100125355
1
REV_GENES
GRMZM2G035282
chr10:100877502-100879751
1
REV_GENES
GRMZM2G004211
chr10:100903641-100921394
4
REV_GENES
GRMZM2G159330
chr10:10092665-10093736
1
FWD_GENES
GRMZM2G320023
chr10:10134037-10138754
2
REV_GENES
GRMZM2G026231
chr10:101365191-101367444
2
FWD_GENES
GRMZM2G415579
chr10:101535511-101540308
3
FWD_GENES
GRMZM2G173792
chr10:10155070-10159006
2
FWD_GENES
GRMZM2G103740
chr10:101585804-101589027
2
REV_GENES
GRMZM2G084547
chr10:101604155-101607416
3
FWD_GENES
GRMZM2G052166
chr10:101619696-101622902
2
FWD_GENES
GRMZM2G442425
chr10:10165318-10168334
1
FWD_GENES
GRMZM2G103662
chr10:101761979-101764918
3
REV_GENES
GRMZM2G412207
chr10:102106502-102110676
3
REV_GENES
GRMZM2G134044
chr10:102151994-102156051
4
FWD_GENES
GRMZM2G336718
chr10:102157862-102165241
4
REV_GENES
GRMZM2G035899
chr10:102238791-102243849
3
FWD_GENES
AC204711.3_FG002
chr10:1022613-1026620
4
REV_GENES
GRMZM2G098603
chr10:102360438-102363106
3
FWD_GENES
AC204711.3_FG001
18242 894 Kbytes .Supplementary file Size Download File type/resource GPL13736_091006_NS_Zmays_CGH_exp.ndf.gz
9.0 Mb
(ftp) (http) NDF
GPL13736_091006_NS_Zmays_CGH_exp.ngd.gz
437.2 Kb
(ftp) (http) NGD
GPL13736_091006_NS_Zmays_CGH_exp.pos.gz
1.4 Mb
(ftp) (http) POS
GPL13736_091006_NS_Zmays_CGH_exp_subset.txt.gz
3.1 Mb
(ftp) (http) TXT
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