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Platform GPL13444 Query DataSets for GPL13444
Status Public on Dec 09, 2011
Title NimbleGen Mixed bacteria 080319_BK_mixed_bact_expr (technical proves averaged)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Fusobacterium nucleatum; Streptococcus mutans UA159; Porphyromonas gingivalis W83; Aggregatibacter actinomycetemcomitans HK1651; Streptococcus sanguinis SK36
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description 385K-format: 3 replicates of up to 13 probes per gene, 60-mer oligonucleotides, 3510 randomized sequence probes.

The array includes probes for Porphyromonas gingivalis W83, Fusobacterium nucleatum DSMZ 25586, Streptococcus sanguinis SK36, Actinobacillus actinomycetemcomitans HK1651, and Streptococcus mutans UA159.
A condensed version of this platform is assigned accession number GPL10873.
Alternative version of this Platform including probes only for Streptococcus sanguinis SK36 is assigned accession number GPL15399.
 
Submission date Apr 22, 2011
Last update date Apr 04, 2012
Contact name Sylvio Redanz
E-mail(s) [email protected]
Phone 0381 494 5939
Organization name hospital university rostock
Department Institute of microbiology, virology and hygiene
Lab medical microbiology
Street address Schillingallee 70
City Rostock
State/province Mecklenburg Vorpommern
ZIP/Postal code 18057
Country Germany
 
Samples (6) GSM714207, GSM714208, GSM714209, GSM714210, GSM714211, GSM714212
Series (1)
GSE28841 A five-species transcriptome array for oral mixed-biofilm studies
Relations
Alternative to GPL10873
Alternative to GPL15399 (S. sanguinis SK36 probes only)

Data table header descriptions
ID
ORGANISM
ORF Entrez locus tags
SEQUENCE probe sequence
PROBE_CLASS
PROBE_ID
POSITION
GENE_NAME
CHROMOSOME Accession number
COORDS Location of ORF on the genome.
STRAND ORF orientation on the genome.
DESCRIPTION

Data table
ID ORGANISM ORF SEQUENCE PROBE_CLASS PROBE_ID POSITION GENE_NAME CHROMOSOME COORDS STRAND DESCRIPTION
FN0001P00051 Fusobacterium nucleatum FN0001 TATAGAAACAGAGAATTTTGAAGTTTCAAAAACAGGTTCACTTGCAGATGATTTAATGCA experimental FN0001P00051 51 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P00076 Fusobacterium nucleatum FN0001 TCAAAAACAGGTTCACTTGCAGATGATTTAATGCAATTTGAAAATATCAATGATATAAAA experimental FN0001P00076 76 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P00122 Fusobacterium nucleatum FN0001 TCAATGATATAAAAATTGAAAATCAAGAAGTTCCAGATATTGAAGTTCAAGAAATATATA experimental FN0001P00122 122 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01038 Fusobacterium nucleatum FN0001 TACTTATTATATAGCTTACGTTTTTAACAAAGAAAGAGATGGAGATTGCCATGTATCTGA experimental FN0001P01038 1038 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01069 Fusobacterium nucleatum FN0001 GAAAGAGATGGAGATTGCCATGTATCTGAATTTGTTAAAAAGACTGATAAAAATATTGTA experimental FN0001P01069 1069 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01131 Fusobacterium nucleatum FN0001 AGAAAATTTAGATGGTGTTGAAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGA experimental FN0001P01131 1131 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01137 Fusobacterium nucleatum FN0001 TTTAGATGGTGTTGAAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATAT experimental FN0001P01137 1137 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01142 Fusobacterium nucleatum FN0001 ATGGTGTTGAAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATATTGAAT experimental FN0001P01142 1142 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01145 Fusobacterium nucleatum FN0001 GTGTTGAAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATATTGAATATT experimental FN0001P01145 1145 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01148 Fusobacterium nucleatum FN0001 TTGAAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATATTGAATATTTGA experimental FN0001P01148 1148 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01151 Fusobacterium nucleatum FN0001 AAGAATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATATTGAATATTTGATAA experimental FN0001P01151 1151 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01154 Fusobacterium nucleatum FN0001 AATTAATTGATGTAGATGCAGATATTGAATATCAAGATAATATTGAATATTTGATAAATA experimental FN0001P01154 1154 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0001P01618 Fusobacterium nucleatum FN0001 TCTGATTTAGGAATGAATAGAACTATTGACAATGTAGGTGAAAAAACATACAATATAGGA experimental FN0001P01618 1618 FN0001 AE009951 639955-641868 - Chromosomal replication initiator protein dnaA
FN0002P00178 Fusobacterium nucleatum FN0002 TTTAGAGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATA experimental FN0002P00178 178 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00179 Fusobacterium nucleatum FN0002 TTAGAGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAG experimental FN0002P00179 179 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00180 Fusobacterium nucleatum FN0002 TAGAGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAGT experimental FN0002P00180 180 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00181 Fusobacterium nucleatum FN0002 AGAGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAGTA experimental FN0002P00181 181 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00182 Fusobacterium nucleatum FN0002 GAGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAGTAG experimental FN0002P00182 182 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00183 Fusobacterium nucleatum FN0002 AGAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAGTAGC experimental FN0002P00183 183 FN0002 AE009951 642688-643023 + Ribonuclease P protein component
FN0002P00184 Fusobacterium nucleatum FN0002 GAGTATATAAGATTAAATATAAACAAAATAAATGATAATTATGATATAATCATAGTAGCT experimental FN0002P00184 184 FN0002 AE009951 642688-643023 + Ribonuclease P protein component

Total number of rows: 132109

Table truncated, full table size 28501 Kbytes.




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Supplementary file Size Download File type/resource
GPL13444_080319_BK_mixed_bact_expr.ndf.gz 22.3 Mb (ftp)(http) NDF
GPL13444_080319_BK_mixed_bact_expr.ngd.gz 255.7 Kb (ftp)(http) NGD

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