GEO help: Mouse over screen elements for information.
Status
Public on Sep 16, 2010
Title
Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v2.2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
NimbleGen
Manufacture protocol
http://www.nimblegen.com Support
glass
Coating
aminosilane
Description
Tiling array AT7v2.2. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing. This design is a refinement of AT7v1 by replacing the existing chrM and chrC probes with a straight tiling of those chromosomes. Probes split between the 2 designs, with every-other probe in each array.
Web link
http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?array_type_id=27 Contributor(s)
Roudier F , Colot V , Aubourg S , Martin-Magniette M , Bérard C , Balzergue S Submission date
Sep 15, 2010
Last update date
Nov 25, 2010
Contact name
Véronique BRUNAUD
E-mail(s)
[email protected] Organization name
INRAE - CNRS - UPSUD
Lab
IPS2
Street address
rue Noetzlin
City
Gif-sur-Yvette
ZIP/Postal code
91190
Country
France
Samples (20)
GSM594547 , GSM594548 , GSM594551 , GSM594552 , GSM594555 , GSM594556
GSM594559 ,
GSM594560 ,
GSM594563 ,
GSM594564 ,
GSM594565 ,
GSM594566 ,
GSM594571 ,
GSM594572 ,
GSM594573 ,
GSM594574 ,
GSM607784 ,
GSM607785 ,
GSM607786 ,
GSM607787 Series (7)
GSE24159 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k27me3_fie_col_seedlings_db)
GSE24160 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k27me3_wt_col_seedlings_db)
GSE24161 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_fie_col_seedlings_db)
GSE24162 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_wt_col_seedlings_db)
GSE24163 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant
GSE24656 h2bub-Establishing a reference epigenome in arabidopsis seedlings
GSE24710 Establishing a reference epigenome in arabidopsis seedlings
Data table header descriptions ID Name of probes
CHROMOSOME which chromosome
RANGE_GB RANGE_START start postion in chromosome
SEQUENCE Sequence of probes
Data table ID CHROMOSOME RANGE_GB RANGE_START SEQUENCE CHR02FS010188918
chr2
NC_003071.3
10188918
ACAATTCGAACAATTGGCCGCATTAGAACTACAATGACATAAAAATGTCTTCGTCATT
CHR04FS013554956
chr4
NC_003075.3
13554956
ACTTCAGCTCGATCACGACTTACACATCATGCTTCACTGCAAATTCGGATAAACAAA
CHR03FS019774478
chr3
NC_003074.4
19774478
TTCGAAAAGTAAGCTTCCTCCGGGACCTACAGGTCTTCCGATCATAGGAA
CHR05FS022993132
chr5
NC_003076.4
22993132
GGCACAGAGAATGGTTTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGGTTCAATCATG
CHR05FS022503880
chr5
NC_003076.4
22503880
TCTGGTTTGTTGTCTAAACGAGACAGAGTGAGCCAAAGCCGTTTGTCTTTT
CHR05FS015171973
chr5
NC_003076.4
15171973
CCACTTGGTTTCTATAATTTATAATAGGTTCTACTGTATAAGGCGTTTCGTCC
CHR01FS025092225
chr1
NC_003070.5
25092225
CTGATTTGATCGACACTTCAGCTCTACTAATATCTCCACAAATAACCTGCACATGACAT
CHR01FS001295748
chr1
NC_003070.5
1295748
GCATCAATCTCTGATATGCTCATCTTTCTACACGGAAGAAAAACAACAACAGTCAATAATATCCA
CHR04FS011545081
chr4
NC_003075.3
11545081
AACCGCCGATCTCTTCCTCGCTAACGTCGGAGAAGTTTTTGTTCTATCAA
CHR01FS008907368
chr1
NC_003070.5
8907368
TGGCGTGTTTTCGCCATAGAGATGATCTGCAACTGTGCCATTTGGAATAAA
CHR02FS014600887
chr2
NC_003071.3
14600887
CCCAATCTTGTACCAATTACTAAAACTACATCGGAATGACTTACTTCTGTGTCTTG
CHR04FS008499657
chr4
NC_003075.3
8499657
ATTTCTGATAGTTCCTTTCTAAGATCACTTACAAACTACAATCCGCAATTTCTAAC
CHR01FS020770570
chr1
NC_003070.5
20770570
TTTATATTATTTGCATATTCTTATGTTAACCCAATACTCATCAGTCATCAGCATCATATTTAATA
CHR01FS029295978
chr1
NC_003070.5
29295978
TTAACTGCAACTCACATAAAAGAATATCTAGATTTAAACCATGATATTGCATAAACCATTA
CHR05FS011951160
chr5
NC_003076.4
11951160
TATGACTTGATGCCATGTGTATGACTCAATATAAAAACAAGAACCGCAACAGATCTTAAAAGCA
CHR05FS021867680
chr5
NC_003076.4
21867680
GTGTTAACATTGTCATGTCCATACCAAACACAATGTTAGAACATATATCTCCGCTCTTTGCT
CHR03FS023075750
chr3
NC_003074.4
23075750
TTTCATCTCACCATCCTCCTTAACCTTGTGAACAGCATCAACACCTTTCCT
CHR04FS015702265
chr4
NC_003075.3
15702265
CGTCGTCATGATTCCCATAACCCATGTTTCCGACTTACTCGTTTCTTACTTT
CHR05FS020557359
chr5
NC_003076.4
20557359
TTGATGCCTTAGCAATTAGCATAGAGACAAAACACAGCCTGTTAATGTTTTACCTGCAACT
CHR03FS006285695
chr3
NC_003074.4
6285695
AAGATTGATCTGACGACCCAAGTGGAAGGTACTTGTTCAAAACGCCAAAAC
360718 34779 Kbytes .Supplementary data files not provided
Less...
More...