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Platform GPL10911 Query DataSets for GPL10911
Status Public on Sep 15, 2010
Title Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v2.1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer NimbleGen
Manufacture protocol http://www.nimblegen.com
Support glass
Coating aminosilane
 
Description Tiling array AT7v2.1. ChIP-chip design of Arabidopsis 7.0 whole genome, with 165 bp spacing. This design is a refinement of AT7v1 by replacing the existing chrM and chrC probes with a straight tiling of those chromosomes. Probes split between the 2 designs, with every-other probe in each array.
 
Web link http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?array_type_id=26
Contributor(s) Roudier F, Colot V, Aubourg S, Martin-Magniette M, Bérard C, Balzergue S
Submission date Sep 14, 2010
Last update date Nov 25, 2010
Contact name Véronique BRUNAUD
E-mail(s) [email protected]
Organization name INRAE - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Samples (20) GSM594545, GSM594546, GSM594549, GSM594550, GSM594553, GSM594554 
Series (7)
GSE24159 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k27me3_fie_col_seedlings_db)
GSE24160 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k27me3_wt_col_seedlings_db)
GSE24161 Genome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_fie_col_seedlings_db)

Data table header descriptions
ID Name of probes
CHROMOSOME which chromosome
START start postion in chromosome (TAIR7)
GB_RANGE RefSeq accession.version[start..stop]
SEQUENCE Sequence of probes

Data table
ID CHROMOSOME START GB_RANGE SEQUENCE
CHR02FS008552174 chr2 8552174 NC_003071.3[8552174..8552232] AGTGATGTTTTAGAGCAAAGAGAAGAATGATCTATCAGTTTACAAGATTTACTTTCGTG
CHR03FS021740602 chr3 21740602 NC_003074.4[21740602..21740652] GTAATTACTGTCTGTCTGCTTTACAGGGTACCTTTAACAAGGCTTCATGGC
CHR01FS026290976 chr1 26290976 NC_003070.5[26290976..26291028] GTAAGAATCTTACCGTAAGATTTATTTCTATTTGCTGTAAAAATATTACTGTT
CHR03FS008661213 chr3 8661213 NC_003074.4[8661213..8661270] CTTTATAACCAATGCACTGTCGTTGAAACGCTGGTGATTACGTATTCTCTCAACACTT
CHR03FS007021311 chr3 7021311 NC_003074.4[7021311..7021368] AAAGCAATAAAACAAAGCATGGTGATGGTAGTTATACTTTCTATTAATGGACTGTTGA
CHR02FS012409163 chr2 12409163 NC_003071.3[12409163..12409225] GATGGAAATGGTGAGTAAAGTATCTAGCAGACACTTAGAAATGAGAAATGGAGGAGATATGAC
CHR01FS014879104 chr1 14879104 NC_003070.5[14879104..14879160] GGAAGAGACCATTCAGTTTATTTCATCCGTGGAATTGCTCTTATATGGAGAGTCAGA
CHR01FS021602164 chr1 21602164 NC_003070.5[21602164..21602218] AATAGGCCTAACTTTTAAAAGCCAGAGCATTGAGTCAAAAGCAAAGAACCGTGAA
CHR05FS025186442 chr5 25186442 NC_003076.4[25186442..25186498] AAACGCCACATCTACAATTTTCACCAAGTTGACGAATTTCAATTCGCTGTCAGTTGG
CHR05FS012922023 chr5 12922023 NC_003076.4[12922023..12922085] ATGTCGTCAAAGAGAGACAGATTATGAAGCAAGATATGTGAAATTCACGATTGCGAACAACGT
CHR04FS008947291 chr4 8947291 NC_003075.3[8947291..8947343] GTATCTATTTAGTTTACAATTGTTATTAAGTAACGTCTTGCCAAATCCGTCCC
CHR04FS000142765 chr4 142765 NC_003075.3[142765..142826] ATAAGCGTAGAGAATAATATCATCAAAGACTTGTGTTGAGCAACTCTCTGTAATCTTTACGA
CHR05FS022222549 chr5 22222549 NC_003076.4[22222549..22222608] GAATATTATCATCTCCCATGAATTGTTTCGTGGGCTTCAAACCAATGTCATGTTAAAAGA
CHR05FS022127995 chr5 22127995 NC_003076.4[22127995..22128044] GAAATTTTGTGGTCTCGGCAATGAAACGATGACCCAGAACTTCACACTCT
CHR05FS007170636 chr5 7170636 NC_003076.4[7170636..7170685] ACCGGATTGGTAAGATGGAGATACCGGATGAAGCGCTTGGTTGTGGATTA
CHR01FS017008756 chr1 17008756 NC_003070.5[17008756..17008814] ATGTGAATTGAAGCTATAATTCAGTGAAGTTTGGTTTAATTATCTACAAAGAGCAATTC
CHR04FS000152014 chr4 152014 NC_003075.3[152014..152063] TCATCCTCTGCCGGACCATTACAACAAACCATCTCCTTAGCAGCTGACGA
CHR02FS019478097 chr2 19478097 NC_003071.3[19478097..19478146] AGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTC
CHR04FS002179378 chr4 2179378 NC_003075.3[2179378..2179431] CTTGAAACATGGAAAATTAAACAAATGTGAAAATGAAGCACTAATTTAGTAAAG
CHR01FS000117196 chr1 117196 NC_003070.5[117196..117245] CTCATTCCAACCCGACTCCGACTCCGAGTCACTGCTAGAATCCGAATTTG

Total number of rows: 360718

Table truncated, full table size 41485 Kbytes.




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Supplementary data files not provided
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