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Links from Protein Clusters

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    DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840514, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding protein
    Primary source
    TAIR:AT1G36095
    Locus tag
    AT1G36095
    See related
    Araport:AT1G36095
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5J5.11; F5J5_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (13491370..13492725, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mutator-like transposase Neighboring gene pseudo Neighboring gene myosin heavy chain-like protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding protein
    NP_174842.1
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 518 Blast hits to 485 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13491370..13492725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103306.1 → NP_174842.1  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCN4, A0A5S9WLS2, F4I1K8
      Conserved Domains (2) summary
      pfam02892
      Location:11 → 47
      zf-BED; BED zinc finger
      pfam04937
      Location:115 → 212
      DUF659; Protein of unknown function (DUF 659)
    Nucleotide Protein
    Heading Accession and Version

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