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Conserved domains on  [gi|15220313|ref|NP_174842|]
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DNA binding protein [Arabidopsis thaliana]

Protein Classification

zf-BED and DUF659 domain-containing protein( domain architecture ID 10502516)

zf-BED and DUF659 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF659 super family cl04853
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 115-212 8.41e-32

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


The actual alignment was detected with superfamily member pfam04937:

Pssm-ID: 461492  Cd Length: 152  Bit Score: 115.74  E-value: 8.41e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220313   115 KKQKGLMDMFV-CPTLPNVLK------VLKDANMLYDHLDLMVDEVGEANVVKVVIDNASNYVKASQLSMANRPHLYWTP 187
Cdd:pfam04937  44 TKGRSIINFLVyCPKGTVFLKsvdasdIIHDADYLAELLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSP 123

                          90       100
                  ....*....|....*....|....*
gi 15220313   188 CAAHCIYLMLEDIGKISEVKTVITQ 212
Cdd:pfam04937 124 CASHCINLMLEDIGKLDWVKEVIEK 148
zf-BED pfam02892
BED zinc finger;
11-47 7.45e-07

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 45.05  E-value: 7.45e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15220313    11 DPVKKYAQPVPLKHGSWRCNYCHKVTN--GGVKGAKQHI 47
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHL 39
 
Name Accession Description Interval E-value
DUF659 pfam04937
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 115-212 8.41e-32

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


Pssm-ID: 461492  Cd Length: 152  Bit Score: 115.74  E-value: 8.41e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220313   115 KKQKGLMDMFV-CPTLPNVLK------VLKDANMLYDHLDLMVDEVGEANVVKVVIDNASNYVKASQLSMANRPHLYWTP 187
Cdd:pfam04937  44 TKGRSIINFLVyCPKGTVFLKsvdasdIIHDADYLAELLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSP 123

                          90       100
                  ....*....|....*....|....*
gi 15220313   188 CAAHCIYLMLEDIGKISEVKTVITQ 212
Cdd:pfam04937 124 CASHCINLMLEDIGKLDWVKEVIEK 148
zf-BED pfam02892
BED zinc finger;
11-47 7.45e-07

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 45.05  E-value: 7.45e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15220313    11 DPVKKYAQPVPLKHGSWRCNYCHKVTN--GGVKGAKQHI 47
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHL 39
 
Name Accession Description Interval E-value
DUF659 pfam04937
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 115-212 8.41e-32

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


Pssm-ID: 461492  Cd Length: 152  Bit Score: 115.74  E-value: 8.41e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220313   115 KKQKGLMDMFV-CPTLPNVLK------VLKDANMLYDHLDLMVDEVGEANVVKVVIDNASNYVKASQLSMANRPHLYWTP 187
Cdd:pfam04937  44 TKGRSIINFLVyCPKGTVFLKsvdasdIIHDADYLAELLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSP 123

                          90       100
                  ....*....|....*....|....*
gi 15220313   188 CAAHCIYLMLEDIGKISEVKTVITQ 212
Cdd:pfam04937 124 CASHCINLMLEDIGKLDWVKEVIEK 148
zf-BED pfam02892
BED zinc finger;
11-47 7.45e-07

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 45.05  E-value: 7.45e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15220313    11 DPVKKYAQPVPLKHGSWRCNYCHKVTN--GGVKGAKQHI 47
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHL 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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