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    MYB55 myb domain protein 55 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826853, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB55
    Official Full Name
    myb domain protein 55
    Primary source
    TAIR:AT4G01680
    Locus tag
    AT4G01680
    See related
    Araport:AT4G01680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB55; myb domain protein 55; T15B16.4; T15B16_4
    Summary
    Encodes a putative transcription factor (MYB55).
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    Genomic context

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    See MYB55 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (715970..717603, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Flavin containing amine oxidoreductase family Neighboring gene Chitinase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantitative expression analysis of selected transcription factors in pavement, basal and trichome cells of mature leaves from Arabidopsis thaliana. Schliep M, et al. Protoplasma, 2010 May. PMID 20101514, Free PMC Article
    2. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
    3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYB55 was higher expressed in basal cells than in trichome and pavement cells.
      Title: Quantitative expression analysis of selected transcription factors in pavement, basal and trichome cells of mature leaves from Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036494.1
    NM_001125441.1
    NM_116398.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 55
    NP_001031571.1
    • myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001118913.1
    • myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_192077.1
    • myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 8918 Blast hits to 8213 proteins in 473 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 506; Plants - 5859; Viruses - 3; Other Eukaryotes - 1799 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      715970..717603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116398.4 → NP_192077.1  myb domain protein 55 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192077.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EWX8, Q9M118
      Conserved Domains (2) summary
      PLN03091
      Location:1 → 331
      PLN03091; hypothetical protein; Provisional
      pfam00249
      Location:14 → 61
      Myb_DNA-binding; Myb-like DNA-binding domain

    2. NM_001125441.1 → NP_001118913.1  myb domain protein 55 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118913.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H664
      Conserved Domains (2) summary
      smart00717
      Location:14 → 63
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:14 → 61
      Myb_DNA-binding; Myb-like DNA-binding domain

    3. NM_001036494.1 → NP_001031571.1  myb domain protein 55 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031571.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EWX8, Q9ZSI4
      Conserved Domains (2) summary
      PLN03091
      Location:1 → 343
      PLN03091; hypothetical protein; Provisional
      pfam00249
      Location:14 → 73
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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