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Conserved domains on  [gi|79324973|ref|NP_001031571|]
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myb domain protein 55 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-343 5.76e-113

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 336.18  E-value: 5.76e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGtflfiqihllfgLQRCGKSCRLRWINYLRPDLKRG 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------------LQRCGKSCRLRWINYLRPDLKRG 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973   81 AFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGIDPVTHKLLTEIETGtDDKTKPVEKSQQ 160
Cdd:PLN03091  69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENG-EDKNPPTDDKSD 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  161 TY---------LVETD---------------------------GSSSTTTCSTNQNNNTDHLYT---------------- 188
Cdd:PLN03091 148 KAssvvsnelnLLKADnskplaalqekrsssispagyqlevesSSSSKINNSNNNNHSNSNLMTptpnkdffldrfttsh 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  189 -------------GNFGFQRLSLENGSRIAAGSDLGIWIPQTGRN-------HHHHVDETIPSAV---VLPGSMF----- 240
Cdd:PLN03091 228 essttscrpsdlvGHFPFQQLNYASNARLSTNPNPTLWFSQNSKSfemnsefSSSMTPSILPPSVtssFLPTPMSykpsi 307

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  241 ----------SSGLTGYRSSNLGLIELENSFSTGPMMTEHQQiqesnyNNSTFFGNGNLNWGL-----TMEENQ------ 299
Cdd:PLN03091 308 slpsdnpsipSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQ------SNSSFFENSIFSWGLadcgkSDKEAQihlles 381

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  300 ------------NPF----TISNHSNSSLYSDIKSETNFfgTEATNVGMWPCNQlQPQQH 343
Cdd:PLN03091 382 dpedikwpeylqNPFlmaaTLQNQTPQPLYNEIKPETHF--ITEGSSTMWPHNQ-QQQEP 438
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-343 5.76e-113

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 336.18  E-value: 5.76e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGtflfiqihllfgLQRCGKSCRLRWINYLRPDLKRG 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------------LQRCGKSCRLRWINYLRPDLKRG 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973   81 AFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGIDPVTHKLLTEIETGtDDKTKPVEKSQQ 160
Cdd:PLN03091  69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENG-EDKNPPTDDKSD 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  161 TY---------LVETD---------------------------GSSSTTTCSTNQNNNTDHLYT---------------- 188
Cdd:PLN03091 148 KAssvvsnelnLLKADnskplaalqekrsssispagyqlevesSSSSKINNSNNNNHSNSNLMTptpnkdffldrfttsh 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  189 -------------GNFGFQRLSLENGSRIAAGSDLGIWIPQTGRN-------HHHHVDETIPSAV---VLPGSMF----- 240
Cdd:PLN03091 228 essttscrpsdlvGHFPFQQLNYASNARLSTNPNPTLWFSQNSKSfemnsefSSSMTPSILPPSVtssFLPTPMSykpsi 307

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  241 ----------SSGLTGYRSSNLGLIELENSFSTGPMMTEHQQiqesnyNNSTFFGNGNLNWGL-----TMEENQ------ 299
Cdd:PLN03091 308 slpsdnpsipSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQ------SNSSFFENSIFSWGLadcgkSDKEAQihlles 381

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  300 ------------NPF----TISNHSNSSLYSDIKSETNFfgTEATNVGMWPCNQlQPQQH 343
Cdd:PLN03091 382 dpedikwpeylqNPFlmaaTLQNQTPQPLYNEIKPETHF--ITEGSSTMWPHNQ-QQQEP 438
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-125 7.09e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 78.29  E-value: 7.09e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973   8 YKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKqagtflfiqihlLFGLqRCGKSCRLRWINYLRPDLKRGAFSQDEE 87
Cdd:COG5147  14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS------------LLIS-STGKQSSNRWNNHLNPQLKKKNWSEEED 80

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 79324973  88 NLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 125
Cdd:COG5147  81 EQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLE 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 79-124 9.76e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 9.76e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 79324973    79 RGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL 124
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-75 8.80e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 8.80e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 79324973     14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTflfiqihllfglqRCGKSCRLRWINYLRP 75
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-------------RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-73 1.36e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.04  E-value: 1.36e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 79324973  17 WSPEEDEKLLRYITKYGHGCWSSVPKQAGTflfiqihllfglqRCGKSCRLRWINYL 73
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-------------RTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-343 5.76e-113

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 336.18  E-value: 5.76e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGtflfiqihllfgLQRCGKSCRLRWINYLRPDLKRG 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------------LQRCGKSCRLRWINYLRPDLKRG 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973   81 AFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGIDPVTHKLLTEIETGtDDKTKPVEKSQQ 160
Cdd:PLN03091  69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENG-EDKNPPTDDKSD 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  161 TY---------LVETD---------------------------GSSSTTTCSTNQNNNTDHLYT---------------- 188
Cdd:PLN03091 148 KAssvvsnelnLLKADnskplaalqekrsssispagyqlevesSSSSKINNSNNNNHSNSNLMTptpnkdffldrfttsh 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  189 -------------GNFGFQRLSLENGSRIAAGSDLGIWIPQTGRN-------HHHHVDETIPSAV---VLPGSMF----- 240
Cdd:PLN03091 228 essttscrpsdlvGHFPFQQLNYASNARLSTNPNPTLWFSQNSKSfemnsefSSSMTPSILPPSVtssFLPTPMSykpsi 307

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  241 ----------SSGLTGYRSSNLGLIELENSFSTGPMMTEHQQiqesnyNNSTFFGNGNLNWGL-----TMEENQ------ 299
Cdd:PLN03091 308 slpsdnpsipSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQ------SNSSFFENSIFSWGLadcgkSDKEAQihlles 381

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973  300 ------------NPF----TISNHSNSSLYSDIKSETNFfgTEATNVGMWPCNQlQPQQH 343
Cdd:PLN03091 382 dpedikwpeylqNPFlmaaTLQNQTPQPLYNEIKPETHF--ITEGSSTMWPHNQ-QQQEP 438
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 6-141 4.67e-51

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 170.26  E-value: 4.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973    6 CCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGtflfiqihllfgLQRCGKSCRLRWINYLRPDLKRGAFSQD 85
Cdd:PLN03212  17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG------------LLRCGKSCRLRWMNYLRPSVKRGGITSD 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 79324973   86 EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRGIDPVTHKLL 141
Cdd:PLN03212  85 EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL 140
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-125 7.09e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 78.29  E-value: 7.09e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973   8 YKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKqagtflfiqihlLFGLqRCGKSCRLRWINYLRPDLKRGAFSQDEE 87
Cdd:COG5147  14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS------------LLIS-STGKQSSNRWNNHLNPQLKKKNWSEEED 80

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 79324973  88 NLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 125
Cdd:COG5147  81 EQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLE 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 79-124 9.76e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 9.76e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 79324973    79 RGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL 124
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-73 8.21e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.44  E-value: 8.21e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324973    14 KGLWSPEEDEKLLRYITKYGhGCWSSVPKQAGTflfiqihllfglqRCGKSCRLRWINYL 73
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-------------RTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-75 8.80e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 8.80e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 79324973     14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTflfiqihllfglqRCGKSCRLRWINYLRP 75
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-------------RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-73 1.36e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.04  E-value: 1.36e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 79324973  17 WSPEEDEKLLRYITKYGHGCWSSVPKQAGTflfiqihllfglqRCGKSCRLRWINYL 73
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-------------RTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-87 2.75e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 55.39  E-value: 2.75e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79324973    17 WSPEEDEKLLRYITKYGHGcWSSVPKQAGtflfiqihllfglQRCGKSCRLRWINYLRPDLKRGAFSQDEE 87
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-------------RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
79-126 9.25e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.77  E-value: 9.25e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 79324973     79 RGAFSQDEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK 126
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 81-121 7.66e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 7.66e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 79324973  81 AFSQDEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWN 121
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 82-129 9.09e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 42.68  E-value: 9.09e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 79324973    82 FSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 129
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 17-71 5.43e-04

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 37.55  E-value: 5.43e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 79324973  17 WSPEEDEKLLRYITKYGHGCWSsvpkqagtflFIQIHLLFGLQRCGKSCRLRWIN 71
Cdd:cd11660   3 WTDEEDEALVEGVEKYGVGNWA----------KILKDYFFVNNRTSVDLKDKWRN 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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