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    MARF1 meiosis regulator and mRNA stability factor 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

    Gene ID: 102454510, updated on 10-Mar-2024

    Summary

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    Gene symbol
    MARF1
    Gene description
    meiosis regulator and mRNA stability factor 1
    See related
    Ensembl:ENSPSIG00000012055
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pelodiscus sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
    Also known as
    KIAA0430
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See MARF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005858992.1 (347636..399317, complement)

    NW_005858992.1Genomic Context describing neighboring genes Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene bMERB domain containing 1 Neighboring gene MORC family CW-type zinc finger protein 4-like Neighboring gene ripply transcriptional repressor 1 Neighboring gene claudin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005858992 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR4-NOT complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA base-pairing translational repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    meiosis regulator and mRNA stability factor 1
    Names
    meiosis arrest female protein 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PelSin_1.0 Primary Assembly

    Genomic

    1. NW_005858992.1 Reference PelSin_1.0 Primary Assembly

      Range
      347636..399317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006136287.3 → XP_006136349.2  meiosis regulator and mRNA stability factor 1

      UniProtKB/TrEMBL
      K7FZF3
      Related
      ENSPSIP00000013413.1, ENSPSIT00000013476.1
      Conserved Domains (12) summary
      cd09978
      Location:737 → 807
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:833 → 904
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:909 → 980
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:993 → 1063
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1069 → 1139
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1145 → 1217
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1220 → 1295
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd10910
      Location:82 → 224
      limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
      COG0724
      Location:434 → 606
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12255
      Location:240 → 312
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:520 → 608
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      cl14879
      Location:609 → 670
      LabA_like_C; C-terminal domain of LabA_like proteins
    Nucleotide Protein
    Heading Accession and Version

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