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    mfsd-13.2 Transmembrane protein 180 [ Caenorhabditis elegans ]

    Gene ID: 174177, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mfsd-13.2
    Official Full Name
    Transmembrane protein 180
    Primary source
    WormBase:WBGene00016174
    Locus tag
    CELE_C27H5.4
    See related
    AllianceGenome:WB:WBGene00016174
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Orthologous to human MFSD13A (major facilitator superfamily domain containing 13A). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See mfsd-13.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    10
    Sequence:
    Chromosome: II; NC_003280.10 (7162443..7165849, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene TAR DNA-binding protein 43 N-terminal domain-containing protein Neighboring gene Ferrochelatase Neighboring gene Cuticle collagen 36 Neighboring gene Intraflagellar transport protein 56 homolog Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane protein 180
    NP_001021997.2
    • Confirmed by transcript evidence
    NP_001021998.2
    • Confirmed by transcript evidence
    NP_001300519.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7162443..7165849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001026826.5 → NP_001021997.2  Transmembrane protein 180 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZ27
      Conserved Domains (1) summary
      pfam13347
      Location:16 → 421
      MFS_2; MFS/sugar transport protein

    2. NM_001026827.3 → NP_001021998.2  Transmembrane protein 180 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7YZG1
      Conserved Domains (1) summary
      pfam13347
      Location:17 → 417
      MFS_2; MFS/sugar transport protein

    3. NM_001313590.3 → NP_001300519.1  Transmembrane protein 180 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ATW7
      Conserved Domains (1) summary
      pfam13347
      Location:25 → 224
      MFS_2; MFS/sugar transport protein
    Nucleotide Protein
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