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    NOSIC domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843376, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NOSIC domain protein
    Primary source
    TAIR:AT1G70400
    Locus tag
    AT1G70400
    See related
    Araport:AT1G70400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17O7.6; F17O7_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (26531399..26533460, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene beta carbonic anhydrase 4 Neighboring gene DNA ligase-like protein, putative (DUF1645)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036183.1
    NM_001160991.1
    NM_105708.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NOSIC domain protein
    NP_001031260.1
    • CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001154463.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 484 Blast hits to 484 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 134; Plants - 124; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    NP_177197.2
    • CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26531399..26533460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160991.1 → NP_001154463.1  NOSIC domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154463.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I5F1
      Conserved Domains (1) summary
      pfam01798
      Location:55 → 156
      Nop; snoRNA binding domain, fibrillarin

    2. NM_001036183.1 → NP_001031260.1  NOSIC domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031260.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WRH0, Q5XVG8
      Conserved Domains (1) summary
      smart00931
      Location:48 → 99
      NOSIC; NOSIC (NUC001) domain

    3. NM_105708.2 → NP_177197.2  NOSIC domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177197.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O64596, Q5XVG7
      Conserved Domains (1) summary
      smart00931
      Location:48 → 99
      NOSIC; NOSIC (NUC001) domain
    Nucleotide Protein
    Heading Accession and Version

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