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    LOC101262209 transcription initiation factor TFIID subunit 4b [ Solanum lycopersicum (tomato) ]

    Gene ID: 101262209, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101262209
    Gene description
    transcription initiation factor TFIID subunit 4b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101262209 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (64718588..64731283)
    103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (62983501..62996173)

    Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene protein SYM1-like Neighboring gene uncharacterized LOC101262513 Neighboring gene uncharacterized protein At2g23090

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 4b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

      Range
      64718588..64731283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004238052.5 → XP_004238100.1  transcription initiation factor TFIID subunit 4b

      UniProtKB/TrEMBL
      A0A3Q7H1N3
      Conserved Domains (2) summary
      pfam05236
      Location:622 → 920
      TAF4; Transcription initiation factor TFIID component TAF4 family
      pfam12174
      Location:214 → 275
      RST; RCD1-SRO-TAF4 (RST) plant domain
    Nucleotide Protein
    Heading Accession and Version

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