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    LOC18103579 peroxisome biogenesis protein 5 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18103579, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC18103579
    Gene description
    peroxisome biogenesis protein 5
    Locus tag
    POPTR_011G170000v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC18103579 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (19275475..19284086)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (18491658..18500261)

    Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene F-box protein At-B Neighboring gene COP9 signalosome complex subunit 6a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peroxisome matrix targeting signal-1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix, docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome biogenesis protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      19275475..19284086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024581235.2 → XP_024437003.1  peroxisome biogenesis protein 5

      UniProtKB/TrEMBL
      A0A2K1YLJ8
      Conserved Domains (2) summary
      COG0457
      Location:485 → 713
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:610 → 638
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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