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Conserved domains on  [gi|1375892049|ref|XP_024437003|]
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peroxisome biogenesis protein 5 [Populus trichocarpa]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 511-733 1.21e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 110.20  E-value: 1.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 511 AEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQAAALkylYGWLRHHSKYGTLANPELSD 588
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYrrRGEYDRAIRI---HQKLLERDPDRAEALLELAQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 589 SLY----YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAI 664
Cdd:COG2956    85 DYLkaglLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 665 LAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPkaDNAWQYLRISLSCASRNDMFEA 733
Cdd:COG2956   165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP--DYLPALPRLAELYEKLGDPEEA 231
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 511-733 1.21e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 110.20  E-value: 1.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 511 AEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQAAALkylYGWLRHHSKYGTLANPELSD 588
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYrrRGEYDRAIRI---HQKLLERDPDRAEALLELAQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 589 SLY----YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAI 664
Cdd:COG2956    85 DYLkaglLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 665 LAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPkaDNAWQYLRISLSCASRNDMFEA 733
Cdd:COG2956   165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP--DYLPALPRLAELYEKLGDPEEA 231
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 487-710 1.81e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.88  E-value: 1.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 487 LFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQAaa 564
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsQGDPSEA-- 416

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 565 lkylygwlrhhskygtlanpeLSDslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDY 644
Cdd:TIGR02917 417 ---------------------IAD----------LETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1375892049 645 SLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 600-714 6.02e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 6.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049  600 NEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSL--WNKLgaTQANS----VQSADAILA------- 666
Cdd:PRK11447   293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESL--LKVNRywllIQQGDAALKannlaqa 370

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1375892049  667 ---YQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNA 714
Cdd:PRK11447   371 erlYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421
TPR_1 pfam00515
Tetratricopeptide repeat;
678-710 2.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 2.01e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1375892049 678 VRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 678-710 5.02e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 5.02e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1375892049  678 VRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 481-668 2.06e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 481 LKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNL-EVLLALG------- 552
Cdd:cd24142     4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyEKYLYLGqlsggee 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 553 -VSHTnelEQAAALkyLYGWLRHHSKYGTLANPELSDS-------------LYYAD----------VARLFNEAAEMSPE 608
Cdd:cd24142    84 aLQYY---EKGIEI--LEEELQALQAASAEAEEEAEELkrklssalcalaeIYMTDlcdepdaeqrCEELITKALELDPT 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375892049 609 DADVHIVLGVLYnLSRE-YDKAISSFQRAlklkpqdYSLWNKLGATQANSVQSADAILAYQ 668
Cdd:cd24142   159 NPEALQTLASLR-ISQQrPDEAKEALRRS-------LELWKDLKEEDEEEAEEDEAEEEDV 211
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 511-733 1.21e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 110.20  E-value: 1.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 511 AEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQAAALkylYGWLRHHSKYGTLANPELSD 588
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYrrRGEYDRAIRI---HQKLLERDPDRAEALLELAQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 589 SLY----YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAI 664
Cdd:COG2956    85 DYLkaglLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 665 LAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPkaDNAWQYLRISLSCASRNDMFEA 733
Cdd:COG2956   165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP--DYLPALPRLAELYEKLGDPEEA 231
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
507-725 2.49e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.47  E-value: 2.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 507 NPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKYlygwlrhhskygtlanpel 586
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD------------------- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 587 sdslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILA 666
Cdd:COG0457    65 ------------YEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 667 YQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLRISLSCA 725
Cdd:COG0457   133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 483-745 7.30e-25

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 110.08  E-value: 7.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 483 EGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGptnlevllALGVSHTNELEQA 562
Cdd:COG3914     7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAG--------EAAAAAAALLLLA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 563 AALKYLYGWLRhhskygtlanpELSDslyYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQ 642
Cdd:COG3914    79 ALLELAALLLQ-----------ALGR---YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 643 DYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLrisL 722
Cdd:COG3914   145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL---L 221

                         250       260
                  ....*....|....*....|...
gi 1375892049 723 SCasrndMFEACDSRNIDVLQKE 745
Cdd:COG3914   222 FA-----LRQACDWEVYDRFEEL 239
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
592-729 8.06e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.93  E-value: 8.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 592 YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQAL 671
Cdd:COG0457    24 YEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKAL 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1375892049 672 DLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLRISLSCASRND 729
Cdd:COG0457   104 ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
604-722 2.51e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 96.61  E-value: 2.51e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 604 EMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWAN 683
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1375892049 684 MGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLRISL 722
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 601-722 6.32e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 89.29  E-value: 6.32e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 601 EAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRA 680
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1375892049 681 WANMGISYANQGMHEDSIRYYVRALAMNPkADNAWQYLRISL 722
Cdd:COG4235    88 LYLLGLAAFQQGDYAEAIAAWQKLLALLP-ADAPARLLEASI 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 483-720 9.76e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 9.76e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 483 EGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELE 560
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYlkAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 561 QAAALkylYGWLRHHSKYGTLANPELSDsLY-----YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQR 635
Cdd:COG2956    94 RAEEL---LEKLLELDPDDAEALRLLAE-IYeqegdWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 636 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAW 715
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249


                  ....*
gi 1375892049 716 QYLRI 720
Cdd:COG2956   250 ALADL 254
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 533-734 8.63e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 90.82  E-value: 8.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 533 AMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKYLYGWLRHHSKYGTLANPELSDSLYYADVARLFNEAAEMSPEDADV 612
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 613 HIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1375892049 693 MHEDSIRYYVRALAMNPKADNAWQYLRISLSCASRNDMFEAC 734
Cdd:COG3914   161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 592-710 1.59e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 82.55  E-value: 1.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 592 YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQAL 671
Cdd:COG4783    20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1375892049 672 DLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:COG4783   100 KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
581-719 1.44e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.57  E-value: 1.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 581 LANPELSDSLYYADVARLFNEAAEMS-------PEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGAT 653
Cdd:COG4785    37 LAIALADLALALAAAALAAAALAAERidralalPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLA 116

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375892049 654 QANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNA--WQYLR 719
Cdd:COG4785   117 YLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERalWLYLA 184
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 481-733 3.45e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 82.73  E-value: 3.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 481 LKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGV--SHTNE 558
Cdd:COG3914    48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNllLALGR 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 559 LEQAAAlkylygwlrhhskygtlanpelsdslyyadvarLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALK 638
Cdd:COG3914   128 LEEALA---------------------------------ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 639 LKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYL 718
Cdd:COG3914   175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254

                         250
                  ....*....|....*
gi 1375892049 719 RISLSCASRNDMFEA 733
Cdd:COG3914   255 LLYLPDDDPAELLAL 269
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 608-718 4.07e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.61  E-value: 4.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 608 EDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGIS 687
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1375892049 688 YANQGMHEDSIRYYVRALAMNPKADNAWQYL 718
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 495-643 2.10e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 73.50  E-value: 2.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 495 EAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKylygwlrh 574
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE-------- 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 575 hskygtlanpelsdslyyadvarLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:COG4235    73 -----------------------LLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 511-677 3.95e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.92  E-value: 3.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 511 AEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVS--HTNELEQAAAlkylygwlrhhskygtlanpelsd 588
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllQLGDLDEAIV------------------------ 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 589 slyyadvarLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 668
Cdd:COG4783    60 ---------LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130


                  ....*....
gi 1375892049 669 QALDLKPNY 677
Cdd:COG4783   131 KALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
619-711 1.39e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.81  E-value: 1.39e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 619 LYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAIlAYQQALDLKPNYVRAWANMGISYANQGMHEDSI 698
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|...
gi 1375892049 699 RYYVRALAMNPKA 711
Cdd:COG3063    80 AYLERALELDPSA 92
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 479-690 2.79e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.57  E-value: 2.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 479 NPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGV--SHT 556
Cdd:COG3914    80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEalRRL 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 557 NELEQAAAlkylygwlrhhskygtlanpelsdslyyadvarLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRA 636
Cdd:COG3914   160 GRLEEAIA---------------------------------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1375892049 637 LKLKPQDYSLWNKL--GATQANSVQSADAILAYQQALDLKPnyvRAWANMGISYAN 690
Cdd:COG3914   207 LELDPDNADAHSNLlfALRQACDWEVYDRFEELLAALARGP---SELSPFALLYLP 259
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
637-718 3.09e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 3.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 637 LKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQ 716
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80


                  ..
gi 1375892049 717 YL 718
Cdd:COG0457    81 NL 82
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 628-718 3.50e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 3.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 628 KAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAM 707
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90
                  ....*....|.
gi 1375892049 708 NPKADNAWQYL 718
Cdd:COG4235    81 DPDNPEALYLL 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 559-711 4.30e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.68  E-value: 4.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 559 LEQAAALKYLYGWLRHHSKYGTLANPELSDSLYYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALK 638
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375892049 639 LKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKA 711
Cdd:COG5010    83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 487-710 1.81e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.88  E-value: 1.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 487 LFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQAaa 564
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsQGDPSEA-- 416

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 565 lkylygwlrhhskygtlanpeLSDslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDY 644
Cdd:TIGR02917 417 ---------------------IAD----------LETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1375892049 645 SLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 481-643 8.95e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.29  E-value: 8.95e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 481 LKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNE 558
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALlkAGD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 559 LEQAaalkylygwlrhhskygtlanpelsdslyyadvARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALK 638
Cdd:COG4783    88 YDEA---------------------------------LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134


                  ....*
gi 1375892049 639 LKPQD 643
Cdd:COG4783   135 LDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
520-723 2.88e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.78  E-value: 2.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 520 AHAENDDDQQAIAAMMRAHEAGPtNLEVLLALGVSHTNELEQAAALKYLYGwlrhHSKYGTLANPELSDSLYYADVARL- 598
Cdd:COG4785    11 ALALAAAAASKAAILLAALLFAA-VLALAIALADLALALAAAALAAAALAA----ERIDRALALPDLAQLYYERGVAYDs 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 599 ----------FNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD-YSLWNkLGATQANSVQSADAILAY 667
Cdd:COG4785    86 lgdydlaiadFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYaYAYLN-RGIALYYLGRYELAIADL 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375892049 668 QQALDLKPNYVRAWANMGISYANQGMH---EDSIRYYVRALAMNPKADNAWQYLRISLS 723
Cdd:COG4785   165 EKALELDPNDPERALWLYLAERKLDPEkalALLLEDWATAYLLQGDTEEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
503-706 1.76e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.47  E-value: 1.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 503 EVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKYlygwlrhhskygtla 582
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED--------------- 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 583 npelsdslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANsvqsad 662
Cdd:COG4785   130 ----------------FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK------ 187

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1375892049 663 aiLAYQQALDlkpNYVRAWANmgiSYANQGMHEDSIRYYVRALA 706
Cdd:COG4785   188 --LDPEKALA---LLLEDWAT---AYLLQGDTEEARELFKLALA 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
484-682 3.21e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 3.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAA 563
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 564 ALKYlygwlrhhskygtlanpelsdslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:COG0457   129 AIEA-------------------------------YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1375892049 644 -YSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWA 682
Cdd:COG0457   178 lLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
592-679 3.30e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.41  E-value: 3.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 592 YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAIsSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQAL 671
Cdd:COG3063     8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86


                  ....*...
gi 1375892049 672 DLKPNYVR 679
Cdd:COG3063    87 ELDPSALR 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 490-714 3.41e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.02  E-value: 3.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 490 KGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQA-AALK 566
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYlgKGQLKKAlAILN 591

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 567 YLYGWLRHHSKY----GT--LANPELSDSLyyadvaRLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLK 640
Cdd:TIGR02917 592 EAADAAPDSPEAwlmlGRaqLAAGDLNKAV------SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375892049 641 PQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNA 714
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 591-722 3.82e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 3.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 591 YYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQA 670
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1375892049 671 LDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLRISL 722
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 487-638 9.82e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 9.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 487 LFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALK 566
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIA 199

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1375892049 567 YLYGWLRHHSKYGTLAnPELSDSLY----YADVARLFNEAAEMSPEDaDVHIVLGVLYNLSREYDKAISSFQRALK 638
Cdd:COG2956   200 ALERALEQDPDYLPAL-PRLAELYEklgdPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 476-692 1.22e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 476 GHPNPL-KEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVS 554
Cdd:TIGR02917 225 NNIAVLlALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 555 --HTNELEQAaaLKYLYGWLRH--HSKYG--TLANPELSDSlYYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDK 628
Cdd:TIGR02917 305 eyQLGNLEQA--YQYLNQILKYapNSHQArrLLASIQLRLG-RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375892049 629 AISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 489-709 1.22e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 489 RKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSH--TNELEQA---- 562
Cdd:TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDiqEGNPDDAiqrf 522

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 563 -AALKYLYGWLRHHSKYGTLANPELSDSlyyaDVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKP 641
Cdd:TIGR02917 523 eKVLTIDPKNLRAILALAGLYLRTGNEE----EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375892049 642 QDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNP 709
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 484-723 4.35e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 4.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAA 563
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 564 ALKYLYGWLrhhskygtlanpelsdslyyadvarlfneaaEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:TIGR02917 450 ALAAAKKLE-------------------------------KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 644 YSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNawqyLRISLS 723
Cdd:TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE----PALALA 574
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 484-718 9.13e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 9.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAA 563
Cdd:TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 564 ALKYLYGWLRHHSKYGT----LANPELSDSlYYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKL 639
Cdd:TIGR02917 654 AITSLKRALELKPDNTEaqigLAQLLLAAK-RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 640 KPQDYSLWnKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK---ADN--A 714
Cdd:TIGR02917 733 APSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDnavVLNnlA 811


                  ....
gi 1375892049 715 WQYL 718
Cdd:TIGR02917 812 WLYL 815
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 481-685 1.11e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 481 LKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAG--PTNLEVLLALGVSHTNE 558
Cdd:TIGR02917  26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypKNQVLPLLARAYLLQGK 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 559 LEQAaaLKYLygwlrhhSKYGTLANPELSDSLYYADVARL-----------FNEAAEMSPEDADVHIVLGVLYNLSREYD 627
Cdd:TIGR02917 106 FQQV--LDEL-------PGKTLLDDEGAAELLALRGLAYLglgqlelaqksYEQALAIDPRSLYAKLGLAQLALAENRFD 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1375892049 628 KAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMG 685
Cdd:TIGR02917 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 623-714 1.44e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 623 SREYDKAISSFQRALKLKPQDYSLWN---KLGATQANSVQSADAILAYQQALDLKPN---YVRAWANMGISYANQGMHED 696
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85

                          90
                  ....*....|....*...
gi 1375892049 697 SIRYYVRALAMNPKADNA 714
Cdd:COG1729    86 ARATLEELIKKYPDSEAA 103
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 495-714 1.52e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 495 EAVLALEAEVLK-NPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVS--HTNELEQA-----AALK 566
Cdd:TIGR02917 176 DEARALIDEVLTaDPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATIliEAGEFEEAekhadALLK 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 567 ---------YLYGWLRHHSKYGTLA----------NPELSDSLYYADVA-----------RLFNEAAEMSPEDADVHIVL 616
Cdd:TIGR02917 256 kapnsplahYLKALVDFQKKNYEDAretlqdalksAPEYLPALLLAGASeyqlgnleqayQYLNQILKYAPNSHQARRLL 335

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 617 GVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHED 696
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415

                         250
                  ....*....|....*...
gi 1375892049 697 SIRYYVRALAMNPKADNA 714
Cdd:TIGR02917 416 AIADLETAAQLDPELGRA 433
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 485-641 1.87e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 1.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 485 QELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAA 564
Cdd:COG5010    28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEA 107

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1375892049 565 LKYlygwlrhhskygtlanpelsdslyyadvarlFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKP 641
Cdd:COG5010   108 KEY-------------------------------YEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 506-676 3.20e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 3.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 506 KNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLaLGVSHTNELEQAAALKYLYGWLRHHSKyGTLANPE 585
Cdd:TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTA 775

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 586 LSDSLY----YADVARLFNEAAEMSPEDADVHIVLGVLYnLSREYDKAISSFQRALKLKPQDYSLWNKLGATQANSVQSA 661
Cdd:TIGR02917 776 LAELYLaqkdYDKAIKHYQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEAD 854

                         170
                  ....*....|....*
gi 1375892049 662 DAILAYQQALDLKPN 676
Cdd:TIGR02917 855 RALPLLRKAVNIAPE 869
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 600-714 6.02e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 6.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049  600 NEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSL--WNKLgaTQANS----VQSADAILA------- 666
Cdd:PRK11447   293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESL--LKVNRywllIQQGDAALKannlaqa 370

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1375892049  667 ---YQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNA 714
Cdd:PRK11447   371 erlYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 484-568 6.17e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 6.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAA 563
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103


                  ....*
gi 1375892049 564 ALKYL 568
Cdd:COG4235   104 AIAAW 108
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 546-673 9.04e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 48.37  E-value: 9.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 546 EVLLALGvshtnelEQAAALKYLYGWLRHH------SKYGTLANPELSDSLyyadvaRLFNEAAEMSPEDADVHIVLGVL 619
Cdd:COG3071   201 RALIALG-------DHDEAERLLREALKRQwdprlvRLYGRLQGGDPAKQL------KRAEKWLKKHPNDPDLLLALGRL 267

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1375892049 620 YNLSREYDKAISSFQRALKLKPqDYSLWNKLGATQANSVQSADAILAYQQALDL 673
Cdd:COG3071   268 CLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALAL 320
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 501-714 1.08e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 1.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 501 EAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVS--HTNELEQAAAL--KYLYGWLRHHS 576
Cdd:TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLalAENRFDEARALidEVLTADPGNVD 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 577 KYGTLANPELSDSLYYADVArLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPqdyslwNKLGATQAN 656
Cdd:TIGR02917 195 ALLLKGDLLLSLGNIELALA-AYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP------NSPLAHYLK 267

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375892049 657 SV------QSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNA 714
Cdd:TIGR02917 268 ALvdfqkkNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
487-568 1.89e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 487 LFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIaAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALK 566
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                  ..
gi 1375892049 567 YL 568
Cdd:COG3063    81 YL 82
TPR_1 pfam00515
Tetratricopeptide repeat;
678-710 2.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 2.01e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1375892049 678 VRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 484-575 3.53e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 3.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPtNLEVLLALGVSHTNELEQAA 563
Cdd:COG2956   185 AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEA 263

                          90
                  ....*....|..
gi 1375892049 564 ALKYLYGWLRHH 575
Cdd:COG2956   264 ALALLERQLRRH 275
TPR_1 pfam00515
Tetratricopeptide repeat;
610-643 4.58e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 4.58e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1375892049 610 ADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 678-710 5.02e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 5.02e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1375892049  678 VRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 652-710 5.49e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 44.28  E-value: 5.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375892049 652 ATQANSvQSADAILAYQQALDLKPN-YVRAWA--NMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:PRK02603   44 SAQADG-EYAEALENYEEALKLEEDpNDRSYIlyNMGIIYASNGEHDKALEYYHQALELNPK 104
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 610-708 7.55e-05

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 45.02  E-value: 7.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 610 ADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLG--ATQANSVQSADAilAYQQALDLKPNYVRAWANMGIS 687
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALAlyYQQLGELEKAED--SFRRALTLNPNNGDVLNNYGTF 108

                          90       100
                  ....*....|....*....|.
gi 1375892049 688 YANQGMHEDSIRYYVRALAMN 708
Cdd:TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP 129
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 592-676 8.81e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 8.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 592 YADVARLFNEAAEMSPED---ADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDY----SLWnKLGATQANSVQSADAI 664
Cdd:COG1729     9 YDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapdALL-KLGLSYLELGDYDKAR 87

                          90
                  ....*....|..
gi 1375892049 665 LAYQQALDLKPN 676
Cdd:COG1729    88 ATLEELIKKYPD 99
TPR_11 pfam13414
TPR repeat;
662-692 9.64e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.15  E-value: 9.64e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1375892049 662 DAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:pfam13414  12 EAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
520-644 1.10e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 520 AHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKylygwlrhhskygtlanpelsdslyyadvarlF 599
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA--------------------------------L 48

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1375892049 600 NEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDY 644
Cdd:COG3063    49 EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
484-646 2.04e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 2.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNLEVLLALGVSHTNELEQAA 563
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 564 ALKYLYGWLRHHSKYGTLANPELSDSLYYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:COG0457   163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242


                  ...
gi 1375892049 644 YSL 646
Cdd:COG0457   243 YRA 245
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 610-643 2.17e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 2.17e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1375892049  610 ADVHIVLGVLYNLSREYDKAISSFQRALKLKPQD 643
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 625-692 3.10e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 3.10e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375892049 625 EYDKAISSFQRALKLK--PQD--YSLWNkLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:PRK02603   50 EYAEALENYEEALKLEedPNDrsYILYN-MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 618-709 7.66e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 42.49  E-value: 7.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 618 VLYNLSREYDKAISSFQRALKLKPQDYS-----LWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:PRK11788  149 EIYQQEKDWQKAIDVAERLEKLGGDSLRveiahFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG 228

                          90
                  ....*....|....*..
gi 1375892049 693 MHEDSIRYYVRALAMNP 709
Cdd:PRK11788  229 DYAAAIEALERVEEQDP 245
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 678-710 1.01e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.01e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1375892049 678 VRAWANMGISYANQGMHEDSIRYYVRALAMNPK 710
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 484-544 1.50e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375892049 484 GQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTN 544
Cdd:COG4235    58 AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 586-648 1.54e-03

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 41.41  E-value: 1.54e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1375892049 586 LSDSLYYADVARL-FNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQ-DYSLWN 648
Cdd:PRK11189   73 LYDSLGLRALARNdFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTyNYAYLN 137
TPR_12 pfam13424
Tetratricopeptide repeat;
610-710 1.98e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 610 ADVHIVLGVLYNLSREYDKAISSFQRALklkpqdySLWNKLGATQansvqsadailayqqaldlKPNYVRAWANMGISYA 689
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKAL-------EIARRLLGPD-------------------HPLTATTLLNLGRLYL 56

                          90       100
                  ....*....|....*....|.
gi 1375892049 690 NQGMHEDSIRYYVRALAMNPK 710
Cdd:pfam13424  57 ELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 481-668 2.06e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 481 LKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAGPTNL-EVLLALG------- 552
Cdd:cd24142     4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyEKYLYLGqlsggee 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 553 -VSHTnelEQAAALkyLYGWLRHHSKYGTLANPELSDS-------------LYYAD----------VARLFNEAAEMSPE 608
Cdd:cd24142    84 aLQYY---EKGIEI--LEEELQALQAASAEAEEEAEELkrklssalcalaeIYMTDlcdepdaeqrCEELITKALELDPT 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375892049 609 DADVHIVLGVLYnLSRE-YDKAISSFQRAlklkpqdYSLWNKLGATQANSVQSADAILAYQ 668
Cdd:cd24142   159 NPEALQTLASLR-ISQQrPDEAKEALRRS-------LELWKDLKEEDEEEAEEDEAEEEDV 211
ycf3 CHL00033
photosystem I assembly protein Ycf3
 625-692 2.25e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 39.61  E-value: 2.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375892049 625 EYDKAISSFQRALKLK--PQD--YSLWNkLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQG 692
Cdd:CHL00033   50 EYAEALQNYYEAMRLEidPYDrsYILYN-IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 661-734 2.80e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 661 ADAILAYQQALDLKPN---YVRAWANMGISYANQGMHEDSIRYYVRALAMNP---KADNAwqYLRISLSCASRNDMFEAC 734
Cdd:COG1729    10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDA--LLKLGLSYLELGDYDKAR 87
TPR_19 pfam14559
Tetratricopeptide repeat;
592-652 5.22e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 5.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375892049 592 YADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKLGA 652
Cdd:pfam14559   4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 610-714 6.26e-03

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 37.26  E-value: 6.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375892049 610 ADVHIVLGVLynLSREYDKAISSFQRALKLKPQ-----DYSLWnkLGATQANSVQSADAILAYQQALDLKPNYVR---AW 681
Cdd:TIGR02795   2 AYYDAALLVL--KAGDYADAIQAFQAFLKKYPKstyapNAHYW--LGEAYYAQGDYADAAKAFLAVVKKYPKSPKapdAL 77

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1375892049 682 ANMGISYANQGMHEDSIRYYVRALAMNPKADNA 714
Cdd:TIGR02795  78 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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