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    LOC105758838 mothers against decapentaplegic homolog 6 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 105758838, updated on 13-Aug-2024

    Summary

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    Gene symbol
    LOC105758838
    Gene description
    mothers against decapentaplegic homolog 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
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    Genomic context

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    See LOC105758838 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 25 NC_044237.2 (124965..128387, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 25 NC_045023.1 (132746..136679, complement)

    Chromosome 25 - NC_044237.2Genomic Context describing neighboring genes Neighboring gene translocon-associated protein subunit beta-like Neighboring gene zinc finger and BTB domain containing 7B Neighboring gene flavin adenine dinucleotide synthetase 1 Neighboring gene CDC28 protein kinase regulatory subunit 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables I-SMAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription regulator inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of heteromeric SMAD protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mothers against decapentaplegic homolog 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044237.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      124965..128387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030291429.3 → XP_030147289.3  mothers against decapentaplegic homolog 6 isoform X2

      Conserved Domains (2) summary
      cd10489
      Location:8 → 132
      MH1_SMAD_6_7; N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7
      cl00056
      Location:173 → 334
      MH2; C-terminal Mad Homology 2 (MH2) domain

    2. XM_012570833.4 → XP_012426287.4  mothers against decapentaplegic homolog 6 isoform X1

      Conserved Domains (2) summary
      cd10489
      Location:8 → 132
      MH1_SMAD_6_7; N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7
      cl00056
      Location:178 → 339
      MH2; C-terminal Mad Homology 2 (MH2) domain
    Nucleotide Protein
    Heading Accession and Version

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