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Conserved domains on  [gi|2043852531|ref|XP_030147289|]
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mothers against decapentaplegic homolog 6 isoform X2 [Taeniopygia guttata]

Protein Classification

mothers against decapentaplegic homolog 9; mothers against decapentaplegic homolog 4 family protein( domain architecture ID 10180323)

mothers against decapentaplegic homolog 9 is a transcriptional modulator activated by BMP (bone morphogenetic proteins) type 1 receptor kinase| mothers against decapentaplegic homolog 4 family protein such as SMAD4, a common mediator SMAD (co-SMAD), which belongs to the Dwarfin family of proteins and is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome (JPS)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MH2 super family cl00056
C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers ...
 173-334 9.17e-91

C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers against decapentaplegic) family of proteins and is responsible for type I receptor interactions, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain which prevents it from forming a complex with SMAD4. The MH2 domain is multifunctional and provides SMADs with their specificity and selectivity, as well as transcriptional activity. Several transcriptional co-activators and repressors have also been reported to regulate SMAD signaling by interacting with the MH2 domain. Mutations in the MH2 domains of SMAD2 and especially SMAD4 have been detected in colorectal and other human cancers.


The actual alignment was detected with superfamily member cd10499:

Pssm-ID: 469593  Cd Length: 174  Bit Score: 268.61  E-value: 9.17e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEHPI 252
Cdd:cd10499    10 WCSVAYWEHRTRVGRLYAVYDQSVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGYGILLSKEPDGVWAYNRSEHPI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 253 FVSSPTLSPPGACRLTVLKVLPGYSAKVFDYERAG--DRGGWQLPGEGPCDPHSIRISFAKGWGPCYSRQFITSCPCWLE 330
Cdd:cd10499    90 FVNSPTLDIPGSRTLVVRKVPPGYSIKVFDYERSCllQHTAEPELADGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLE 169


                  ....
gi 2043852531 331 VLLN 334
Cdd:cd10499   170 ILLN 173
MH1_SMAD_6_7 cd10489
N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding ...
 8-132 9.92e-47

N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD6 and SMAD7, both inhibitory SMADs (I-SMADs) and negative regulators of signaling mediated by TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


:

Pssm-ID: 199813  Cd Length: 119  Bit Score: 154.08  E-value: 9.92e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   8 GLVRRLWRQRCAAASAEDGPSALKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPRGDPRGVKQglPPQVLLCRL 87
Cdd:cd10489     1 GAVRRLWAHRTRHSQNPLEERDLRAAFHALLKRLKEKQLELLLQAVESRGGDYLACVLLPRRDPRSMPQ--DPHVLCCQL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2043852531  88 FRWPDLHQSHELKHLCYCTGGQgacgDLAVLCCNPHHFSRLAVPE 132
Cdd:cd10489    79 FRWPDLRHSSELKRLPTCESAK----DPVYVCCNPYHWSRLCRPE 119
 
Name Accession Description Interval E-value
MH2_SMAD_6 cd10499
C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus ...
 173-334 9.17e-91

C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD6, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by competing with SMAD4 and preventing the transcription of SMAD4's gene products. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling. SMAD6 and SMAD7 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1 (IRAK1), via their MH2 domains.


Pssm-ID: 199824  Cd Length: 174  Bit Score: 268.61  E-value: 9.17e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEHPI 252
Cdd:cd10499    10 WCSVAYWEHRTRVGRLYAVYDQSVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGYGILLSKEPDGVWAYNRSEHPI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 253 FVSSPTLSPPGACRLTVLKVLPGYSAKVFDYERAG--DRGGWQLPGEGPCDPHSIRISFAKGWGPCYSRQFITSCPCWLE 330
Cdd:cd10499    90 FVNSPTLDIPGSRTLVVRKVPPGYSIKVFDYERSCllQHTAEPELADGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLE 169


                  ....
gi 2043852531 331 VLLN 334
Cdd:cd10499   170 ILLN 173
MH2 pfam03166
MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD ...
 173-334 4.14e-66

MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C-terminus of MH2.


Pssm-ID: 460834  Cd Length: 172  Bit Score: 205.93  E-value: 4.14e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEAsvNVFCELPR----GSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRS 248
Cdd:pfam03166   3 WCSVAYYELNTRVGEAFKVSSP--NVTVDGFTdpsdGNRFCLGLLSNVNRNEAVEKVRKHIGKGVRLSYDGGEVWIYNLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 249 EHPIFVSSPTLSPPGACRL-TVLKVLPGYSAKVFDYERAGD--RGGWQLPGEGPCDPH---SIRISFAKGWGPCYSRQFI 322
Cdd:pfam03166  81 DHPVFVQSPYLNREAGRAPdTVHKVPPGESLKVFDMRKFQQllSQELRRARLGPQDANklcSVRISFVKGWGPDYSRQDI 160

                         170
                  ....*....|..
gi 2043852531 323 TSCPCWLEVLLN 334
Cdd:pfam03166 161 TSTPCWIEIHLH 172
DWB smart00524
Domain B in dwarfin family proteins;
173-334 7.59e-63

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 197.53  E-value: 7.59e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  173 WCKLAYWEYRTRVGRLYAVHE--ASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEH 250
Cdd:smart00524   2 WCKIAYYELNTRVGETFKVSSpsVTVDGFTDPSDGNRFCLGQLSNVNRNEATELIRKHIGKGVQLSYENGDVWLYNRSDS 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  251 PIFVSSPTLS-PPGACRLTVLKVLPGYSAKVFDYERAGdrggwQLP-------GEGPCDPH---SIRISFAKGWGPCYSR 319
Cdd:smart00524  82 PIFVQSPYLDePGGRTLDTVHKLPPGYSIKVFDMEKFA-----QLLarelakgFEGVYDLArmcTIRISFVKGWGPDYSR 156

                          170
                   ....*....|....*
gi 2043852531  320 QFITSCPCWLEVLLN 334
Cdd:smart00524 157 QTITSTPCWIEVHLN 171
MH1_SMAD_6_7 cd10489
N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding ...
 8-132 9.92e-47

N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD6 and SMAD7, both inhibitory SMADs (I-SMADs) and negative regulators of signaling mediated by TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199813  Cd Length: 119  Bit Score: 154.08  E-value: 9.92e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   8 GLVRRLWRQRCAAASAEDGPSALKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPRGDPRGVKQglPPQVLLCRL 87
Cdd:cd10489     1 GAVRRLWAHRTRHSQNPLEERDLRAAFHALLKRLKEKQLELLLQAVESRGGDYLACVLLPRRDPRSMPQ--DPHVLCCQL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2043852531  88 FRWPDLHQSHELKHLCYCTGGQgacgDLAVLCCNPHHFSRLAVPE 132
Cdd:cd10489    79 FRWPDLRHSSELKRLPTCESAK----DPVYVCCNPYHWSRLCRPE 119
DWA smart00523
Domain A in dwarfin family proteins;
30-132 2.93e-29

Domain A in dwarfin family proteins;


Pssm-ID: 214708  Cd Length: 109  Bit Score: 108.23  E-value: 2.93e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   30 LKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPR---GDPRGVKQGLPPQVLLCRLFRWPDLHQSHELKHLCYCT 106
Cdd:smart00523   6 AKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRsldGRLQVAHRKGLPHVLYCRLFRWPDLQSPHELKALPTCE 85

                           90       100
                   ....*....|....*....|....*.
gi 2043852531  107 GGQGACGDLavLCCNPHHFSRLAVPE 132
Cdd:smart00523  86 HAFESKSDE--VCCNPYHYSRVERPE 109
MH1 pfam03165
MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related ...
 30-128 7.22e-26

MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localization signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx.


Pssm-ID: 460833  Cd Length: 103  Bit Score: 99.37  E-value: 7.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  30 LKPAVHALFKKLKD--EELELLVQVVESRGAWESGCVLAPRG-DPRGVKQG--LPPQVLLCRLFRWPDLHQSHELKHLCY 104
Cdd:pfam03165   1 LKKAVESLLKKLKKkiQQLEELELAVESRGDPPTGCVTIPRSlDGRLQVAGrkGLPHVIYCRLWRWPDLQSQHELKAIPT 80

                          90       100
                  ....*....|....*....|....
gi 2043852531 105 CTGGQGACGDLavLCCNPHHFSRL 128
Cdd:pfam03165  81 CETAFESKKDE--VCINPYHYSRV 102
 
Name Accession Description Interval E-value
MH2_SMAD_6 cd10499
C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus ...
 173-334 9.17e-91

C-terminal Mad Homology 2 (MH2) domain in SMAD6; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD6, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by competing with SMAD4 and preventing the transcription of SMAD4's gene products. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling. SMAD6 and SMAD7 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1 (IRAK1), via their MH2 domains.


Pssm-ID: 199824  Cd Length: 174  Bit Score: 268.61  E-value: 9.17e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEHPI 252
Cdd:cd10499    10 WCSVAYWEHRTRVGRLYAVYDQSVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGYGILLSKEPDGVWAYNRSEHPI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 253 FVSSPTLSPPGACRLTVLKVLPGYSAKVFDYERAG--DRGGWQLPGEGPCDPHSIRISFAKGWGPCYSRQFITSCPCWLE 330
Cdd:cd10499    90 FVNSPTLDIPGSRTLVVRKVPPGYSIKVFDYERSCllQHTAEPELADGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLE 169


                  ....
gi 2043852531 331 VLLN 334
Cdd:cd10499   170 ILLN 173
MH2_I-SMAD cd10496
C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs; The MH2 domain is located at the ...
 173-334 1.66e-83

C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD6 and SMAD7 are inhibitory SMADs (I-SMADs) that function as negative regulators of signaling mediated by the TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling, while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199821  Cd Length: 165  Bit Score: 249.96  E-value: 1.66e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNVFCELPRGSGFCLAQL-PAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEHP 251
Cdd:cd10496     1 WCTIAYWELRERVGRLYPVKQPAVNIFDDLPKGDGFCLGALnRQGNASEAVARVRSKIGLGVTLSREPDGVWIYNRSEYP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 252 IFVSSPTLSPPGACRLTVLKVLPGYSAKVFDYERAGD--RGGWQLPGEGPCDPHSIRISFAKGWGPCYSRQFITSCPCWL 329
Cdd:cd10496    81 IFVNSPTLDSPPSRNLLVTKVPPGYSLKVFDYERAALlqRRDDHFSPQGPVDPNSVRISFVKGWGPNYSRQFITSCPCWL 160


                  ....*
gi 2043852531 330 EVLLN 334
Cdd:cd10496   161 EILLN 165
MH2 pfam03166
MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD ...
 173-334 4.14e-66

MH2 domain; This is the MH2 (MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C-terminus of MH2.


Pssm-ID: 460834  Cd Length: 172  Bit Score: 205.93  E-value: 4.14e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEAsvNVFCELPR----GSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRS 248
Cdd:pfam03166   3 WCSVAYYELNTRVGEAFKVSSP--NVTVDGFTdpsdGNRFCLGLLSNVNRNEAVEKVRKHIGKGVRLSYDGGEVWIYNLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 249 EHPIFVSSPTLSPPGACRL-TVLKVLPGYSAKVFDYERAGD--RGGWQLPGEGPCDPH---SIRISFAKGWGPCYSRQFI 322
Cdd:pfam03166  81 DHPVFVQSPYLNREAGRAPdTVHKVPPGESLKVFDMRKFQQllSQELRRARLGPQDANklcSVRISFVKGWGPDYSRQDI 160

                         170
                  ....*....|..
gi 2043852531 323 TSCPCWLEVLLN 334
Cdd:pfam03166 161 TSTPCWIEIHLH 172
MH2 cd00050
C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers ...
 173-334 3.96e-63

C-terminal Mad Homology 2 (MH2) domain; The MH2 domain is found in the SMAD (small mothers against decapentaplegic) family of proteins and is responsible for type I receptor interactions, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain which prevents it from forming a complex with SMAD4. The MH2 domain is multifunctional and provides SMADs with their specificity and selectivity, as well as transcriptional activity. Several transcriptional co-activators and repressors have also been reported to regulate SMAD signaling by interacting with the MH2 domain. Mutations in the MH2 domains of SMAD2 and especially SMAD4 have been detected in colorectal and other human cancers.


Pssm-ID: 199819  Cd Length: 170  Bit Score: 198.21  E-value: 3.96e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNV--FCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEH 250
Cdd:cd00050     1 WCSIAYYELNTRVGELFHVYSPSVAVdgFTDPSNGDRFCLGQLSNVNRNETIERTRRHIGKGVHLYYVGGEVWAECLSDH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 251 PIFVSSPTLS-PPGACRLTVLKVLPGYSAKVFDYERAG------DRGGWQLPGEGPCDPhSIRISFAKGWGPCYSRQFIT 323
Cdd:cd00050    81 AIFVQSRNLDyPHGRHPLTVCKIPPGCSIKVFDNQEFAqllhqsVNTGFEGVYELTKMC-TIRMSFVKGWGPEYHRQDIT 159

                         170
                  ....*....|.
gi 2043852531 324 SCPCWLEVLLN 334
Cdd:cd00050   160 STPCWIEIHLH 170
DWB smart00524
Domain B in dwarfin family proteins;
173-334 7.59e-63

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 197.53  E-value: 7.59e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  173 WCKLAYWEYRTRVGRLYAVHE--ASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEH 250
Cdd:smart00524   2 WCKIAYYELNTRVGETFKVSSpsVTVDGFTDPSDGNRFCLGQLSNVNRNEATELIRKHIGKGVQLSYENGDVWLYNRSDS 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  251 PIFVSSPTLS-PPGACRLTVLKVLPGYSAKVFDYERAGdrggwQLP-------GEGPCDPH---SIRISFAKGWGPCYSR 319
Cdd:smart00524  82 PIFVQSPYLDePGGRTLDTVHKLPPGYSIKVFDMEKFA-----QLLarelakgFEGVYDLArmcTIRISFVKGWGPDYSR 156

                          170
                   ....*....|....*
gi 2043852531  320 QFITSCPCWLEVLLN 334
Cdd:smart00524 157 QTITSTPCWIEVHLN 171
MH2_SMAD_7 cd10500
C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus ...
 173-334 2.77e-57

C-terminal Mad Homology 2 (MH2) domain in SMAD7; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD7, an inhibitory or antagonistic SMAD (I-SMAD), acts as a negative regulator of signaling mediated by the TGF-beta superfamily of ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. SMAD7 and SMAD6 act as critical mediators for effective TGF-beta I-mediated suppression of Interleukin-1/Toll-like receptor (IL-1R/TLR) signaling through simultaneous binding to Pellino-1, an adaptor protein of interleukin-1 receptor associated kinase 1(IRAK1), via their MH2 domains. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199825  Cd Length: 171  Bit Score: 183.32  E-value: 2.77e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEHPI 252
Cdd:cd10500     8 WCVVAYWEEKTRVGRLYSVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGYGIQLTREVDGVWVYNRSSYPI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 253 FVSSPTLSPPGACRLTVLKVLPGYSAKVFDYERAGDrggWQLPG-----EGPCDPHSIRISFAKGWGPCYSRQFITSCPC 327
Cdd:cd10500    88 FIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYS---LQRPNdhefmQQPWTGFTVQISFVKGWGQCYTRQFISSCPC 164


                  ....*..
gi 2043852531 328 WLEVLLN 334
Cdd:cd10500   165 WLEVIFN 171
MH1_SMAD_6_7 cd10489
N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding ...
 8-132 9.92e-47

N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD6 and SMAD7, both inhibitory SMADs (I-SMADs) and negative regulators of signaling mediated by TGF-beta superfamily. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling while SMAD7 enhances muscle differentiation and is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199813  Cd Length: 119  Bit Score: 154.08  E-value: 9.92e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   8 GLVRRLWRQRCAAASAEDGPSALKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPRGDPRGVKQglPPQVLLCRL 87
Cdd:cd10489     1 GAVRRLWAHRTRHSQNPLEERDLRAAFHALLKRLKEKQLELLLQAVESRGGDYLACVLLPRRDPRSMPQ--DPHVLCCQL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2043852531  88 FRWPDLHQSHELKHLCYCTGGQgacgDLAVLCCNPHHFSRLAVPE 132
Cdd:cd10489    79 FRWPDLRHSSELKRLPTCESAK----DPVYVCCNPYHWSRLCRPE 119
MH1_SMAD_6 cd10493
N-terminal Mad Homology 1 (MH1) domain in SMAD6; The MH1 is a small DNA-binding domain present ...
 18-132 2.90e-34

N-terminal Mad Homology 1 (MH1) domain in SMAD6; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD6, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by competing with SMAD4 and preventing the transcription of SMAD4's gene products. SMAD6 specifically inhibits bone morphogenetic protein (BMP) type I receptor mediated signaling.


Pssm-ID: 199817  Cd Length: 113  Bit Score: 121.80  E-value: 2.90e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  18 CAAASAEDGPSALKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPRGDPRGVKQGLPPQVLLCRLFRWPDLHQSH 97
Cdd:cd10493     1 EGKSRQVALEQELKSVTYALLKRLKERSLDVLLEAVESRGGLPSGCVMVPRTELRLGGRRVPPQLLLCRLFRWPDLQHPA 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2043852531  98 ELKHLCYCTGGQGAcgDLAVLCCNPHHFSRLAVPE 132
Cdd:cd10493    81 QLKALCHCQSFGAQ--DGPTVCCNPYHYSRLCGPE 113
MH2_R-SMAD cd10495
C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs; The MH2 domain is located ...
 173-336 2.38e-30

C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. Receptor regulated SMADs (R-SMADs) include SMAD1, SMAD2, SMAD3, SMAD5 and SMAD9. SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta. SMAD5 is involved in BMP signal modulation, possibly playing a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 (also known as SMAD8) can mediate the differentiation of mesenchymal stem cells into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199820  Cd Length: 182  Bit Score: 113.63  E-value: 2.38e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNV--FCELPRGSG-FCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSE 249
Cdd:cd10495     1 WCSISYYELNSRVGEQFKASNPSIIVdgFTDPSNNSDrFCLGLLSNVNRNATIENTRRHIGRGVHLFYVGGEVYAECLSD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 250 HPIFVSSPTLS-----PPGacrlTVLKVLPGYSAKVFDYE----------RAGDRGGWQLpgEGPCdphSIRISFAKGWG 314
Cdd:cd10495    81 SAIFVQSRNCNlrhgfHPA----TVCKIPPGCSLKIFNNQsfaqlleqsvNRGFEAVYEL--TKMC---TIRISFVKGWG 151

                         170       180
                  ....*....|....*....|..
gi 2043852531 315 PCYSRQFITSCPCWLEVLLNQP 336
Cdd:cd10495   152 AEYHRQDVTSTPCWIEIHLHGP 173
DWA smart00523
Domain A in dwarfin family proteins;
30-132 2.93e-29

Domain A in dwarfin family proteins;


Pssm-ID: 214708  Cd Length: 109  Bit Score: 108.23  E-value: 2.93e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   30 LKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAPR---GDPRGVKQGLPPQVLLCRLFRWPDLHQSHELKHLCYCT 106
Cdd:smart00523   6 AKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRsldGRLQVAHRKGLPHVLYCRLFRWPDLQSPHELKALPTCE 85

                           90       100
                   ....*....|....*....|....*.
gi 2043852531  107 GGQGACGDLavLCCNPHHFSRLAVPE 132
Cdd:smart00523  86 HAFESKSDE--VCCNPYHYSRVERPE 109
MH1 pfam03165
MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related ...
 30-128 7.22e-26

MH1 domain; The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localization signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx.


Pssm-ID: 460833  Cd Length: 103  Bit Score: 99.37  E-value: 7.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  30 LKPAVHALFKKLKD--EELELLVQVVESRGAWESGCVLAPRG-DPRGVKQG--LPPQVLLCRLFRWPDLHQSHELKHLCY 104
Cdd:pfam03165   1 LKKAVESLLKKLKKkiQQLEELELAVESRGDPPTGCVTIPRSlDGRLQVAGrkGLPHVIYCRLWRWPDLQSQHELKAIPT 80

                          90       100
                  ....*....|....*....|....
gi 2043852531 105 CTGGQGACGDLavLCCNPHHFSRL 128
Cdd:pfam03165  81 CETAFESKKDE--VCINPYHYSRV 102
MH2_SMAD_2_3 cd10985
C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; The MH2 domain is located at the ...
 173-336 1.05e-24

C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD2 and SMAD3 are receptor regulated SMADs (R-SMADs). SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta.


Pssm-ID: 199826  Cd Length: 191  Bit Score: 98.85  E-value: 1.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAVHEASVNV--FCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNRSEH 250
Cdd:cd10985     9 WCSISYYEMNTRVGETFHASQPSLTVdgFTDPSNSERFCLGLLSNVNRNPQVELTRRHIGKGVRLYYIGGEVFAECLSDS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 251 PIFVSSPTLSPP-GACRLTVLKVLPGYSAKVFDYER----------AGDRGGWQLPGEgpCdphSIRISFAKGWGPCYSR 319
Cdd:cd10985    89 AIFVQSPNCNQRyGWHPATVCKIPPGCNLKIFNNQEfaallsqsvnQGFEAVYQLTRM--C---TIRMSFVKGWGAEYRR 163

                         170
                  ....*....|....*..
gi 2043852531 320 QFITSCPCWLEVLLNQP 336
Cdd:cd10985   164 QTVTSTPCWIELHLNGP 180
MH1 cd00049
N-terminal Mad Homology 1 (MH1) domain; The MH1 is a small DNA-binding domain present in SMAD ...
 30-128 1.40e-24

N-terminal Mad Homology 1 (MH1) domain; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. Receptor-regulated SMAD proteins (R-SMADs, including SMAD1, SMAD2, SMAD3, SMAD5, and SMAD9) are activated by phosphorylation by transforming growth factor (TGF)-beta type I receptors. The active R-SMAD associates with a common mediator SMAD (Co-SMAD or SMAD4) and other cofactors, which together translocate to the nucleus to regulate gene expression. The inhibitory or antagonistic SMADs (I-SMADs, including SMAD6 and SMAD7) negatively regulate TGF-beta signaling by competing with R-SMADs for type I receptor or Co-SMADs. MH1 domains of R-SMAD and SMAD4 contain a nuclear localization signal as well as DNA-binding activity. The activated R-SMAD/SMAD4 complex then binds with very low affinity to a DNA sequence CAGAC called SMAD-binding element (SBE) via the MH1 domain.


Pssm-ID: 199811  Cd Length: 121  Bit Score: 96.50  E-value: 1.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  30 LKPAVHALFKKLKD-EELELLVQVVESRGAWESGCVLAPR-GDPR---GVKQGlPPQVLLCRLFRWPDLHQSHELKHLCY 104
Cdd:cd00049    19 AKKAVKSLVKKLKEkKQLDSLEKAITTQGGVPSKCVTIPRsLDGRlqvAHRKG-LPHVIYCRLWRWPDLHSHHELKALEL 97

                          90       100
                  ....*....|....*....|....
gi 2043852531 105 CTGGQGACGDlaVLCCNPHHFSRL 128
Cdd:cd00049    98 CQFAFNMKKD--EVCVNPYHYQRV 119
MH2_SMAD_4 cd10498
C-terminal Mad Homology 2 (MH2) domain in SMAD4; The MH2 domain is located at the C-terminus ...
 173-336 5.46e-24

C-terminal Mad Homology 2 (MH2) domain in SMAD4; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD4, which belongs to the Dwarfin family of proteins, is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and the cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer, cervical cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome.


Pssm-ID: 199823  Cd Length: 222  Bit Score: 97.93  E-value: 5.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 173 WCKLAYWEYRTRVGRLYAV----HEASVNVFCELPRGSGFCLAQLPAAYRSCAVRRARGKIGRGLLLS-QEPGGVWAYNR 247
Cdd:cd10498     4 WCSIAYFELDTQVGETFKVpsscPTVTVDGYVDPSGGNRFCLGQLSNVHRTEASERARLHIGKGVQLDcKGEGDVWLRCL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 248 SEHPIFVSSPTLS-----PPGacrLTVLKVLPGYSAKVFDYER-----------------------AGDRGGWQLPGEGP 299
Cdd:cd10498    84 SDHSVFVQSYYLDreagrAPG---DAVHKIYPSAYIKVFDLRQchrqmqqqaataqaaaaaqaaavAGNIPGPGSVGGIA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2043852531 300 CDPH----------------SIRISFAKGWGPCYSRQFITSCPCWLEVLLNQP 336
Cdd:cd10498   161 PAISlsaaagigvddlrrlcILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRA 213
MH1_SMAD_7 cd10494
N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present ...
 18-134 2.31e-23

N-terminal Mad Homology 1 (MH1) domain in SMAD7; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD7, an inhibitory SMAD (I-SMAD) or antagonistic SMAD, which acts as a negative regulator of signaling mediated by TGF-beta superfamily ligands, by blocking TGF-beta type 1 and activin association with the receptor as well as access to SMAD2. SMAD7 enhances muscle differentiation, playing pivotal roles in embryonic development and adult homoeostasis. Altered expression of SMAD7 is often associated with cancer, tissue fibrosis and inflammatory diseases.


Pssm-ID: 199818  Cd Length: 123  Bit Score: 93.40  E-value: 2.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  18 CAAASAEDGP-----SALKPAVHALFKKLKDEELELLVQVVESRGAWESGCVLAP-RGDPRGVKQGLPPQVLLCRLFRWP 91
Cdd:cd10494     3 CLAKPPRGGGggaaeAELKALTHSVLKKLKERQLEGLLQAVESRGGARTPCLLLPaRLDARLGQQSYSLPLLLCKVFRWP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2043852531  92 DLHQSHELKHLCYCTGGQGACGDLavLCCNPHHFSRLAVPETP 134
Cdd:cd10494    83 DLRHSSEVKRLSCCESYGKINPEL--VCCNPHHLSRLCELESP 123
MH2_SMAD_1_5_9 cd10497
C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9; The MH2 domain is located at ...
 172-336 8.77e-21

C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9; The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD1, SMAD5 and SMAD9 (also known as SMAD8), are receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in BMP signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199822  Cd Length: 201  Bit Score: 88.78  E-value: 8.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 172 CWCKLAYWEYRTRVGRLYAVHEASVNV--FCElPRGSG--FCLAQLPAAYRSCAVRRARGKIGRGLLLSQEPGGVWAYNR 247
Cdd:cd10497     6 YWCSIAYYELNNRVGEAFHASSTSIIVdgFTD-PSNNSdrFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531 248 SEHPIFVSSPTLS-PPGACRLTVLKVLPGYSAKVFDYER----------AGDRGGWQLPGEgpCdphSIRISFAKGWGPC 316
Cdd:cd10497    85 SDSSIFVQSRNCNyHHGFHPTTVCKIPPGCSLKIFNNQEfaqllsqsvnHGFEAVYELTKM--C---TIRMSFVKGWGAE 159

                         170       180
                  ....*....|....*....|
gi 2043852531 317 YSRQFITSCPCWLEVLLNQP 336
Cdd:cd10497   160 YHRQDVTSTPCWIEIHLHGP 179
MH1_SMAD_4 cd10492
N-terminal Mad Homology 1 (MH1) domain in SMAD4; The MH1 is a small DNA-binding domain present ...
 31-127 2.20e-16

N-terminal Mad Homology 1 (MH1) domain in SMAD4; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 belongs to SMAD4, a common mediator SMAD (co-SMAD), which belongs to the Dwarfin family of proteins and is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome (JPS).


Pssm-ID: 199816  Cd Length: 125  Bit Score: 74.41  E-value: 2.20e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  31 KPAVHALFKKLKDE--ELELLVQVVESRGAWESGCVLAPRG-DPR---GVKQGLPpQVLLCRLFRWPDLHQShELKHLCY 104
Cdd:cd10492    24 KRAIESLVKKLKDKrdELDSLITAITSNGAHPSKCVTIQRTlDGRlqvAGRKGFP-HVIYARIWRWPDLHKN-ELKHVKF 101

                          90       100
                  ....*....|....*....|....
gi 2043852531 105 C-TGGQGACGDlavLCCNPHHFSR 127
Cdd:cd10492   102 CqYAFDLKCDS---VCVNPYHYER 122
MH1_R-SMAD cd10488
N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; The MH1 is a small ...
 10-128 4.89e-12

N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in all receptor regulated SMADs (R-SMADs) including SMAD1, SMAD2, SMAD3, SMAD5 and SMAD9. SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta. SMAD4, a common mediator SMAD (co-SMAD) binds R-SMADs, forming an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation, possibly playing a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 (also known as SMAD8) can mediate the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway


Pssm-ID: 199812  Cd Length: 123  Bit Score: 62.21  E-value: 4.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  10 VRRLWRQRCAAASAEDGPSALKpAVHALFKKLK-DEELELLVQVVESRGAwESGCVLAPRGDP----RGVKQGLPpQVLL 84
Cdd:cd10488     3 VKRLLGWKKGEQNGEEEKWAEK-AVKSLVKKLKkKGQLEELEKAISTQNV-NTRCVTIPRSLDgrlqVSHRKGLP-HVIY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2043852531  85 CRLFRWPDLHQSHELKHLCYCTGGQGACGDlaVLCCNPHHFSRL 128
Cdd:cd10488    80 CRLWRWPDLQSHHELKPLELCEFAFNMKKE--EVCINPYHYKRV 121
MH1_SMAD_2_3 cd10491
N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3; The MH1 is a small DNA-binding ...
 9-128 4.03e-10

N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3; The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 is found in SMAD2 as well as SMAD3. SMAD2 mediates the signal of the transforming growth factor (TGF)-beta, and thereby regulates multiple cellular processes, such as cell proliferation, apoptosis, and differentiation. It plays a role in the transmission of extracellular signals from ligands of the TGF-beta superfamily growth factors into the cell nucleus. SMAD3 modulates signals of activin and TGF-beta. It binds SMAD4, enabling its transmigration into the nucleus where it forms complexes with other proteins and acts as a transcription factor. Increased SMAD3 activity has been implicated in the pathogenesis of scleroderma.


Pssm-ID: 199815  Cd Length: 124  Bit Score: 56.77  E-value: 4.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531   9 LVRRLWRQRCAAASAEDGPSalKPAVHALFKKLKD----EELELLVQVVESrgawESGCVLAPRG-DPR---GVKQGLPp 80
Cdd:cd10491     4 VVKRLLGWKKGENGQEEKWS--EKAVKSLVKKLKKtgglDELEKAITTQNS----NTKCITIPRSlDGRlqvSHRKGLP- 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2043852531  81 QVLLCRLFRWPDLHQSHELKHLCYCTGGQGACGDlaVLCCNPHHFSRL 128
Cdd:cd10491    77 HVIYCRLWRWPDLQSHHELRAIETCEYAFNLKKD--EVCVNPYHYQRV 122
MH1_SMAD_1_5_9 cd10490
N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8); The ...
 10-128 1.60e-09

N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8); The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD1, SMAD5 and SMAD9, all closely related receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway.


Pssm-ID: 199814  Cd Length: 124  Bit Score: 55.20  E-value: 1.60e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043852531  10 VRRL--WRQrcaaaSAEDGPSALKpAVHALFKKLKD-----EELELLVqvveSRGAWESGCVLAPRG-DPR---GVKQGL 78
Cdd:cd10490     6 VKRLlgWKQ-----GDEEEKWAEK-AVDSLVKKLKKkkgalEELEKAL----SCPGQPSKCVTIPRSlDGRlqvSHRKGL 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2043852531  79 PpQVLLCRLFRWPDLHQSHELKHLCYCTGGQGAcgDLAVLCCNPHHFSRL 128
Cdd:cd10490    76 P-HVIYCRVWRWPDLQSHHELKPLECCEFPFGS--KQKEVCINPYHYKRV 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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