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    AGTPBP1 ATP/GTP binding carboxypeptidase 1 [ Hirundo rustica (Barn swallow) ]

    Gene ID: 120765230, updated on 3-Aug-2024

    Summary

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    Gene symbol
    AGTPBP1
    Gene description
    ATP/GTP binding carboxypeptidase 1
    See related
    EnsemblRapid:ENSHRRG00010012540
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hirundo rustica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
    Orthologs
    human mouse all
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    Genomic context

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    See AGTPBP1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) Z NC_053488.1 (39057541..39132584, complement)

    Chromosome Z - NC_053488.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120765954 Neighboring gene neurotrophic receptor tyrosine kinase 2 Neighboring gene N-alpha-acetyltransferase 35, NatC auxiliary subunit Neighboring gene golgi membrane protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053488.1 Chromosome Z Reference bHirRus1.pri.v3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in C-terminal protein deglutamylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein side chain deglutamylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic carboxypeptidase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bHirRus1.pri.v3

    Genomic

    1. NC_053488.1 Reference bHirRus1.pri.v3

      Range
      39057541..39132584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058424235.1 → XP_058280218.1  cytosolic carboxypeptidase 1 isoform X4

    2. XM_040089840.2 → XP_039945774.1  cytosolic carboxypeptidase 1 isoform X1

      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    3. XM_040089842.2 → XP_039945776.1  cytosolic carboxypeptidase 1 isoform X1

      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    4. XM_058424234.1 → XP_058280217.1  cytosolic carboxypeptidase 1 isoform X3

    5. XM_058424233.1 → XP_058280216.1  cytosolic carboxypeptidase 1 isoform X2

    6. XM_040089838.1 → XP_039945772.1  cytosolic carboxypeptidase 1 isoform X1

      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    7. XM_040089837.1 → XP_039945771.1  cytosolic carboxypeptidase 1 isoform X1

      Related
      ENSHRRP00010017002.1, ENSHRRT00010018020.2
      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    8. XM_040089843.2 → XP_039945777.1  cytosolic carboxypeptidase 1 isoform X1

      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    9. XM_040089844.2 → XP_039945778.1  cytosolic carboxypeptidase 1 isoform X1

      Conserved Domains (1) summary
      cd06906
      Location:870 → 1139
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    10. XM_058424236.1 → XP_058280219.1  cytosolic carboxypeptidase 1 isoform X5

    RNA

    1. XR_009208640.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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