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    LGI1 leucine rich glioma inactivated 1 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120369564, updated on 21-Mar-2024

    Summary

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    Gene symbol
    LGI1
    Gene description
    leucine rich glioma inactivated 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See LGI1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 7 NC_052629.1 (31434775..31475562)

    Linkage Group 7 - NC_052629.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6C Neighboring gene protein FRA10AC1 Neighboring gene solute carrier family 35 member G1 Neighboring gene phospholipase C epsilon 1 Neighboring gene uncharacterized LOC120409152

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052629.1 Chromosome 7 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich glioma-inactivated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052629.1 Reference ASM1616193v1 Primary Assembly

      Range
      31434775..31475562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039483069.1 → XP_039339003.1  leucine-rich glioma-inactivated protein 1 isoform X1

      Conserved Domains (4) summary
      TIGR00864
      Location:138 → 213
      PCC; polycystin cation channel protein
      sd00031
      Location:85 → 108
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:496 → 535
      EPTP; EPTP domain
      pfam13855
      Location:91 → 143
      LRR_8; Leucine rich repeat

    2. XM_039483071.1 → XP_039339005.1  leucine-rich glioma-inactivated protein 1 isoform X3

      Conserved Domains (4) summary
      TIGR00864
      Location:107 → 182
      PCC; polycystin cation channel protein
      sd00031
      Location:54 → 77
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:465 → 504
      EPTP; EPTP domain
      pfam13855
      Location:60 → 112
      LRR_8; Leucine rich repeat

    3. XM_039483068.1 → XP_039339002.1  leucine-rich glioma-inactivated protein 1 isoform X1

      Conserved Domains (4) summary
      TIGR00864
      Location:138 → 213
      PCC; polycystin cation channel protein
      sd00031
      Location:85 → 108
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:496 → 535
      EPTP; EPTP domain
      pfam13855
      Location:91 → 143
      LRR_8; Leucine rich repeat

    4. XM_039483072.1 → XP_039339006.1  leucine-rich glioma-inactivated protein 1 isoform X4

      Conserved Domains (4) summary
      TIGR00864
      Location:138 → 225
      PCC; polycystin cation channel protein
      sd00031
      Location:85 → 108
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:441 → 480
      EPTP; EPTP domain
      pfam13855
      Location:91 → 143
      LRR_8; Leucine rich repeat

    5. XM_039483070.1 → XP_039339004.1  leucine-rich glioma-inactivated protein 1 isoform X2

      Conserved Domains (4) summary
      TIGR00864
      Location:114 → 189
      PCC; polycystin cation channel protein
      sd00031
      Location:85 → 108
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:472 → 511
      EPTP; EPTP domain
      pfam13855
      Location:83 → 141
      LRR_8; Leucine rich repeat

    6. XM_039483073.1 → XP_039339007.1  leucine-rich glioma-inactivated protein 1 isoform X5

      Conserved Domains (4) summary
      TIGR00864
      Location:35 → 110
      PCC; polycystin cation channel protein
      sd00031
      Location:6 → 29
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:393 → 432
      EPTP; EPTP domain
      pfam13855
      Location:4 → 62
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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