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    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816133, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT2G16365
    Locus tag
    AT2G16365
    See related
    Araport:AT2G16365
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (7074119..7079519)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene 40S ribosomal protein S25 Neighboring gene miscRNA Neighboring gene thymidylate synthase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PCH1 and PCHL Directly Interact with PIF1, Promote Its Degradation, and Inhibit Its Transcriptional Function during Photomorphogenesis. Cheng MC, et al. Mol Plant, 2020 Mar 2. PMID 32061894, Free PMC Article
    2. PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in Arabidopsis. Huang H, et al. Proc Natl Acad Sci U S A, 2019 Apr 23. PMID 30948632, Free PMC Article
    3. PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis. Huang H, et al. Elife, 2016 Feb 3. PMID 26839287, Free PMC Article
    4. Plastids are major regulators of light signaling in Arabidopsis. Ruckle ME, et al. Plant Physiol, 2012 May. PMID 22383539, Free PMC Article
    5. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Huang H, et al. Mol Cell Proteomics, 2016 Jan. PMID 26545401, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PCH1 and PCHL Directly Interact with PIF1, Promote Its Degradation, and Inhibit Its Transcriptional Function during Photomorphogenesis.
      Title: PCH1 and PCHL Directly Interact with PIF1, Promote Its Degradation, and Inhibit Its Transcriptional Function during Photomorphogenesis.
    2. Investigated and present evidence of function of PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 (PCH1) as an essential structural component of phytochrome B-containing photobodies in photomorphogenesis and thermomorphogenesis of Arabidopsis.
      Title: PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in Arabidopsis.
    3. PCH1 is a new factor that regulates photoperiod-responsive growth by integrating the clock with light perception pathways through modulating daily phyB-signaling.[PCH1]
      Title: PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124856.2
    NM_001124857.2
    NM_001335470.1
    NM_001335471.1
    NM_147321.2
    NM_201987.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of photomorphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein
    NP_001118328.1
    • F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001118329.1
    • F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_671856.2
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973716.1
    • F-box family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7074119..7079519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124857.2 → NP_001118329.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118329.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84V03
      Conserved Domains (2) summary
      PLN03215
      Location:463 → 649
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam00646
      Location:466 → 510
      F-box; F-box domain

    2. NM_201987.2 → NP_973716.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVZ7

    3. NM_147321.2 → NP_671856.2  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_671856.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF61, Q84V03, Q94B23, Q9SIW6
      UniProtKB/TrEMBL
      A0A7G2ECT7
      Conserved Domains (2) summary
      PLN03215
      Location:467 → 700
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam00646
      Location:470 → 514
      F-box; F-box domain

    4. NM_001335470.1 → NP_001323527.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVZ7

    5. NM_001124856.2 → NP_001118328.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118328.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF61, Q84V03, Q94B23, Q9SIW6
      UniProtKB/TrEMBL
      A0A7G2ECT7
      Conserved Domains (2) summary
      PLN03215
      Location:467 → 700
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam00646
      Location:470 → 514
      F-box; F-box domain

    6. NM_001335471.1 → NP_001323528.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVZ7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84V03.2

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