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    histone deacetylase complex subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838515, updated on 18-Sep-2024

    Summary

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    Official Full Name
    histone deacetylase complex subunit
    Primary source
    TAIR:AT1G19330
    Locus tag
    AT1G19330
    See related
    Araport:AT1G19330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O14.5; F18O14_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (6680423..6683559, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene Methyltransferase MT-A70 family protein Neighboring gene Brassinosteroid signaling positive regulator (BZR1) family protein Neighboring gene Nucleotide-diphospho-sugar transferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Sin3-HDAC Complex Facilitates Temporal Histone Deacetylation at the CCA1 and PRR9 Loci for Robust Circadian Oscillation. Lee HG, et al. Front Plant Sci, 2019. PMID 30833956, Free PMC Article
    2. Photoperiodic regulation of flowering time through periodic histone deacetylation of the florigen gene FT. Gu X, et al. PLoS Biol, 2013 Sep. PMID 24019760, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198104.1
    NM_101790.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone deacetylase complex subunit
    NP_001077561.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_001185033.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1).
    NP_564079.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6680423..6683559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084092.2 → NP_001077561.1  histone deacetylase complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077561.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W980, A0A5S9V6G1, Q9LN65
      Conserved Domains (1) summary
      pfam13867
      Location:167 → 220
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

    2. NM_101790.4 → NP_564079.1  histone deacetylase complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564079.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9H7, A0A178WB70, Q8LA64
      Conserved Domains (1) summary
      pfam13867
      Location:172 → 225
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

    3. NM_001198104.1 → NP_001185033.1  histone deacetylase complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185033.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9H7, F4HP43
      Conserved Domains (1) summary
      pfam13867
      Location:174 → 223
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30
    Nucleotide Protein
    Heading Accession and Version

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