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Conserved domains on  [gi|145323944|ref|NP_001077561|]
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histone deacetylase complex subunit [Arabidopsis thaliana]

Protein Classification

histone deacetylase complex subunit SAP30 Sin3-binding domain-containing protein( domain architecture ID 10620574)

histone deacetylase complex subunit SAP30 Sin3-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAP30_Sin3_bdg pfam13867
Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of ...
 167-220 3.75e-20

Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of the SAP30 proteins appears to be the binding region for Sin3.


:

Pssm-ID: 464006  Cd Length: 53  Bit Score: 80.67  E-value: 3.75e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 145323944  167 LEMPALLNYWRHFNLvDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 220
Cdd:pfam13867   1 LQTNTLRRYKRHYKL-QVRPGSSKEQLVEAVQRHFAAQPVDEKEVITSFIYAVK 53
 
Name Accession Description Interval E-value
SAP30_Sin3_bdg pfam13867
Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of ...
 167-220 3.75e-20

Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of the SAP30 proteins appears to be the binding region for Sin3.


Pssm-ID: 464006  Cd Length: 53  Bit Score: 80.67  E-value: 3.75e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 145323944  167 LEMPALLNYWRHFNLvDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 220
Cdd:pfam13867   1 LQTNTLRRYKRHYKL-QVRPGSSKEQLVEAVQRHFAAQPVDEKEVITSFIYAVK 53
 
Name Accession Description Interval E-value
SAP30_Sin3_bdg pfam13867
Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of ...
 167-220 3.75e-20

Sin3 binding region of histone deacetylase complex subunit SAP30; This C-terminal domain of the SAP30 proteins appears to be the binding region for Sin3.


Pssm-ID: 464006  Cd Length: 53  Bit Score: 80.67  E-value: 3.75e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 145323944  167 LEMPALLNYWRHFNLvDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 220
Cdd:pfam13867   1 LQTNTLRRYKRHYKL-QVRPGSSKEQLVEAVQRHFAAQPVDEKEVITSFIYAVK 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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