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    VRTN vertebrae development associated [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699513, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VRTNprovided by VGNC
    Official Full Name
    vertebrae development associatedprovided by VGNC
    Primary source
    VGNC:VGNC:79236
    Locus tag
    EGK_18374
    See related
    Ensembl:ENSMMUG00000012383
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C14orf115; C7H14orf115
    Orthologs
    human mouse all
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    Genomic context

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    See VRTN in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (136454434..136477657)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (136712423..136734575)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene visual system homeobox 2 Neighboring gene ATP binding cassette subfamily D member 4 Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene synapse differentiation inducing 1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vertnin
    Names
    vertebrae development homolog (pig)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194898.1 → NP_001181827.1  vertnin

      See identical proteins and their annotated locations for NP_001181827.1

      Status: INFERRED

      Source sequence(s)
      QNVO02000421
      UniProtKB/TrEMBL
      A0A8J8XKL1, F7APM8, G7MYS9
      Related
      ENSMMUP00000032728.1, ENSMMUT00000017365.4
      Conserved Domains (1) summary
      NF033516
      Location:273 → 352
      transpos_IS3; IS3 family transposase

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      136454434..136477657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028850259.1 → XP_028706092.1  vertnin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XKL1, F7APM8, G7MYS9
      Conserved Domains (1) summary
      NF033516
      Location:273 → 352
      transpos_IS3; IS3 family transposase
    Nucleotide Protein
    Heading Accession and Version

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