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    CID5 CTC-interacting domain 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831015, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID5
    Official Full Name
    CTC-interacting domain 5
    Primary source
    TAIR:AT5G11440
    Locus tag
    AT5G11440
    See related
    Araport:AT5G11440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 5; F15N18.30; F15N18_30; INCREASED POLYPLOIDY LEVEL IN DARKNESS 1; IPD1
    Summary
    Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.
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    Genomic context

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    See CID5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (3652714..3654202, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF642) Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene uncharacterized protein Neighboring gene PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene hypothetical protein (DUF581) Neighboring gene bromo-adjacent homology (BAH) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light-dependent polyploidy control by a CUE protein variant in Arabidopsis. Tsumoto Y, et al. Plant Mol Biol, 2006 Jul. PMID 16897495
    2. Four distinct classes of proteins as interaction partners of the PABC domain of Arabidopsis thaliana Poly(A)-binding proteins. Bravo J, et al. Mol Genet Genomics, 2005 Feb. PMID 15650869
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343191.1
    NM_121182.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 5
    NP_196705.1
    • CTC-interacting domain 5 (CID5); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 6 (TAIR:AT5G25540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3652714..3654202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121182.3 → NP_196705.1  CTC-interacting domain 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196705.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYE5
      UniProtKB/TrEMBL
      A0A178U6L2, A0A5S9Y440
      Conserved Domains (1) summary
      cd14371
      Location:68 → 110
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins

    2. NM_001343191.1 → NP_001331464.1  CTC-interacting domain 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYE5
      UniProtKB/TrEMBL
      A0A178U6L2, A0A5S9Y440
      Conserved Domains (1) summary
      cd14371
      Location:68 → 110
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYE5.1

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