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    SLO1 SLOW GROWTH 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816772, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SLO1
    Official Full Name
    SLOW GROWTH 1
    Primary source
    TAIR:AT2G22410
    Locus tag
    AT2G22410
    See related
    Araport:AT2G22410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M13.19; F14M13_19; SLOW GROWTH 1
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    Genomic context

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    See SLO1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9509016..9511231)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene miscRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria. Sung TY, et al. Plant J, 2010 Aug. PMID 20497377
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. results suggest that the SLO1 protein may indirectly regulate plant growth and development via affecting mitochondrial RNA editing and gene expression
      Title: The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria.
    Submit: New GeneRIF Correction

    General gene information

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    NM_127805.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SLOW GROWTH 1
    NP_179827.1
    • SLOW GROWTH 1 (SLO1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42589 Blast hits to 14346 proteins in 282 species: Archae - 0; Bacteria - 11; Metazoa - 210; Fungi - 265; Plants - 41374; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9509016..9511231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127805.3 → NP_179827.1  SLOW GROWTH 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179827.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJZ3
      UniProtKB/TrEMBL
      A0A178VT52, A0A5S9X087, A0A654EV28, E3VTW6
      Conserved Domains (2) summary
      PLN03077
      Location:117 → 668
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:457 → 484
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJZ3.1

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