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Conserved domains on  [gi|15227199|ref|NP_179827|]
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SLOW GROWTH 1 [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 117-668 2.76e-136

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.76e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCcesRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNA 196
Cdd:PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV---RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  197 SIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Cdd:PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDvsrklfddmeekdvvl 356
Cdd:PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD---------------- 371

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  357 wnamiggsvqakrgqDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Cdd:PLN03077 372 ---------------KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  437 CGNISEALSVFHGIQTRNSLTYTAIIGGLAL------------------------------------------------- 467
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLnnrcfealiffrqmlltlkpnsvtliaalsacarigalmcgkeihahvl 516

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  468 --------------------------------------------------HGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Cdd:PLN03077 517 rtgigfdgflpnalldlyvrcgrmnyawnqfnshekdvvswnilltgyvaHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  498 SACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELG 577
Cdd:PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  578 EKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDR 657
Cdd:PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756

                        650
                 ....*....|.
gi 15227199  658 LHCLGRHMRSS 668
Cdd:PLN03077 757 LEGFYEKMKAS 767
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 117-668 2.76e-136

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.76e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCcesRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNA 196
Cdd:PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV---RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  197 SIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Cdd:PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDvsrklfddmeekdvvl 356
Cdd:PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD---------------- 371

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  357 wnamiggsvqakrgqDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Cdd:PLN03077 372 ---------------KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  437 CGNISEALSVFHGIQTRNSLTYTAIIGGLAL------------------------------------------------- 467
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLnnrcfealiffrqmlltlkpnsvtliaalsacarigalmcgkeihahvl 516

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  468 --------------------------------------------------HGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Cdd:PLN03077 517 rtgigfdgflpnalldlyvrcgrmnyawnqfnshekdvvswnilltgyvaHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  498 SACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELG 577
Cdd:PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  578 EKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDR 657
Cdd:PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756

                        650
                 ....*....|.
gi 15227199  658 LHCLGRHMRSS 668
Cdd:PLN03077 757 LEGFYEKMKAS 767
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 571-633 4.63e-18

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 78.35  E-value: 4.63e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15227199   571 HGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIE 633
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 223-257 3.37e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.37e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227199   223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 117-668 2.76e-136

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.76e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCcesRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNA 196
Cdd:PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV---RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  197 SIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Cdd:PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDvsrklfddmeekdvvl 356
Cdd:PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD---------------- 371

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  357 wnamiggsvqakrgqDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Cdd:PLN03077 372 ---------------KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  437 CGNISEALSVFHGIQTRNSLTYTAIIGGLAL------------------------------------------------- 467
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLnnrcfealiffrqmlltlkpnsvtliaalsacarigalmcgkeihahvl 516

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  468 --------------------------------------------------HGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Cdd:PLN03077 517 rtgigfdgflpnalldlyvrcgrmnyawnqfnshekdvvswnilltgyvaHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  498 SACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELG 577
Cdd:PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  578 EKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDR 657
Cdd:PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756

                        650
                 ....*....|.
gi 15227199  658 LHCLGRHMRSS 668
Cdd:PLN03077 757 LEGFYEKMKAS 767
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 135-661 2.43e-95

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 309.11  E-value: 2.43e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  135 KESFLLYkQMLRHGCCESRPDHfTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVF 214
Cdd:PLN03081 104 REALELF-EILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  215 DESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPL 294
Cdd:PLN03081 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  295 VNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGlldvsrklfddmeekdvvlwnamiggsvqakRGQDAL 374
Cdd:PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG-------------------------------YSEEAL 310

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  375 ALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRN 454
Cdd:PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  455 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVD 534
Cdd:PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  535 LLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRA 614
Cdd:PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 15227199  615 RRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCL 661
Cdd:PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 202-518 5.41e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.94  E-value: 5.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   202 ASCGDMENARKVFDESPVR----DLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Cdd:PLN03218  483 AKSGKVDAMFEVFHEMVNAgveaNVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   278 EFYEYVKENglrmTIPL------VNALMDMFSKCGDIHEARRIFDNLEKRTIVS----WTTMISGYARCGLLDVSRKLFD 347
Cdd:PLN03218  563 DVLAEMKAE----THPIdpdhitVGALMKACANAGQVDRAKEVYQMIHEYNIKGtpevYTIAVNSCSQKGDWDFALSIYD 638

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   348 DMEEKDV----VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLgaldvgiwihryiekyslsln 423
Cdd:PLN03218  639 DMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA--------------------- 697

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   424 valgtslvdmyakcGNISEALSVFHGIQT---RNSL-TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSA 499
Cdd:PLN03218  698 --------------KNWKKALELYEDIKSiklRPTVsTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763

                         330
                  ....*....|....*....
gi 15227199   500 CCHGGMIQTGRDYFSQMKS 518
Cdd:PLN03218  764 SERKDDADVGLDLLSQAKE 782
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 571-633 4.63e-18

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 78.35  E-value: 4.63e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15227199   571 HGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIE 633
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 262-519 3.29e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.45  E-value: 3.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   262 GLVSSC-SMLGDLN-RGK---------EFYEYVKENG------------LRMTIPLVNALMDMFSKCGDIHEARRIFDNL 318
Cdd:PLN03218  384 GRIKDCiDLLEDMEkRGLldmdkiyhaKFFKACKKQRavkeafrfakliRNPTLSTFNMLMSVCASSQDIDGALRVLRLV 463

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   319 EKRTI----VSWTTMISGYARCGLLDVSRKLFDDME----EKDVVLWNAMIGGSvqAKRGQDALAL--FQEMQTSNTKPD 388
Cdd:PLN03218  464 QEAGLkadcKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGC--ARAGQVAKAFgaYGIMRSKNVKPD 541

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   389 EITMIHCLSACSQLGALDVGIWIHRYIEKYSLSL---NVALGtSLVDMYAKCGNISEALSVFHGIQTRN----SLTYTAI 461
Cdd:PLN03218  542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIdpdHITVG-ALMKACANAGQVDRAKEVYQMIHEYNikgtPEVYTIA 620

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15227199   462 IGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSR 519
Cdd:PLN03218  621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
PLN03077 PLN03077
Protein ECB2; Provisional
 371-567 2.06e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 70.65  E-value: 2.06e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI 450
Cdd:PLN03077  68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  451 QTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACchGGM--IQTGRDYFSQMkSRFNLNPQLKH 528
Cdd:PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIpdLARGREVHAHV-VRFGFELDVDV 224

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 15227199  529 YSIMVDLLGRAGLLEEADRLMESMPMEaDAAVWGALLFG 567
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISG 262
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 233-552 4.33e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 69.52  E-value: 4.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   233 KKIGEAEKAIYVYKLMESegvkPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEAR 312
Cdd:PLN03218  417 KKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   313 RIFDNLEKRTIV----SWTTMISGYARCGLLDVSRKLFDDMEEKDV----VLWNAMIGGSVQAKRGQDALALFQEM--QT 382
Cdd:PLN03218  493 EVFHEMVNAGVEanvhTFGALIDGCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMkaET 572

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   383 SNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQ----TRNSLTY 458
Cdd:PLN03218  573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKkkgvKPDEVFF 652

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   459 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSrFNLNPQLKHYSIMVDLLGR 538
Cdd:PLN03218  653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCE 731

                         330
                  ....*....|....
gi 15227199   539 AGLLEEADRLMESM 552
Cdd:PLN03218  732 GNQLPKALEVLSEM 745
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 154-346 8.09e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 65.67  E-value: 8.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   154 PDHFTYPVLFKVCADL----RLSSLGHMILGHVLKLRLElvshVHNASIHMFASCGDMENARKVFDE----SPVRDLVSW 225
Cdd:PLN03218  577 PDHITVGALMKACANAgqvdRAKEVYQMIHEYNIKGTPE----VYTIAVNSCSQKGDWDFALSIYDDmkkkGVKPDEVFF 652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   226 NCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKC 305
Cdd:PLN03218  653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 15227199   306 GDIHEARRIFDNLE----KRTIVSWTTMISGYARCGLLDVSRKLF 346
Cdd:PLN03218  733 NQLPKALEVLSEMKrlglCPNTITYSILLVASERKDDADVGLDLL 777
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 330-575 2.96e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 60.28  E-value: 2.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   330 ISGYARC---GLLDVSRKLFDDMEEKDVV----LWNAMIGGSVQAKRG-QDALALFQEMQTSNTKPDEITMIHCLSACSQ 401
Cdd:PLN03218  374 IDAYNRLlrdGRIKDCIDLLEDMEKRGLLdmdkIYHAKFFKACKKQRAvKEAFRFAKLIRNPTLSTFNMLMSVCASSQDI 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   402 LGALDVgiwiHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFH-----GIQTrNSLTYTAIIGGLALHGDASTAIS 476
Cdd:PLN03218  454 DGALRV----LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHemvnaGVEA-NVHTFGALIDGCARAGQVAKAFG 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   477 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSrfnlnpqlkhysimvdllgraglleeadrlmESMPMEA 556
Cdd:PLN03218  529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA-------------------------------ETHPIDP 577

                         250
                  ....*....|....*....
gi 15227199   557 DAAVWGALLFGCRMHGNVE 575
Cdd:PLN03218  578 DHITVGALMKACANAGQVD 596
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 220-267 2.38e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.44  E-value: 2.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227199   220 RDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSC 267
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 453-502 2.78e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.44  E-value: 2.78e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227199   453 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 502
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 116-168 2.20e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 2.20e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15227199   116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCcesRPDHFTYPVLFKVCAD 168
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGV---KPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 352-396 4.20e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 4.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227199   352 KDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEIT---MIHCL 396
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTytiLINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 56-286 6.12e-07

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 52.95  E-value: 6.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199   56 LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFcalsesryldYSvkilkgienpnifSWnvtirgfsesenpk 135
Cdd:PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL----------YS-------------KW-------------- 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227199  136 esfllykqmlrhgccesrpdhftypvlfkvcadlrlsslghmilghvlklrlelvshvhnasihmfascGDMENARKVFD 215
Cdd:PLN03081 374 ---------------------------------------------------------------------GRMEDARNVFD 384

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15227199  216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN 286
Cdd:PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 223-257 3.37e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.37e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227199   223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 321-363 1.30e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.30e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15227199   321 RTIVSWTTMISGYARCGLLDVSRKLFDDMEEK----DVVLWNAMIGG 363
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILING 47
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 324-354 2.26e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.26e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227199   324 VSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 296-335 8.76e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 8.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15227199   296 NALMDMFSKCGDIHEARRIFDNLEKR----TIVSWTTMISGYAR 335
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 223-253 1.30e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.30e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227199   223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGV 253
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 248-304 1.42e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 1.42e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15227199   248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSK 304
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 457-490 1.98e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 1.98e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227199   457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDE 490
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 320-350 2.20e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227199   320 KRTIVSWTTMISGYARCGLLDVSRKLFDDME 350
Cdd:pfam12854   4 KPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 324-356 7.85e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 7.85e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227199   324 VSWTTMISGYARCGLLDVSRKLFDDMEEKDVVL 356
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 457-486 5.27e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 5.27e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15227199   457 TYTAIIGGLALHGDASTAISYFNEMIDAGI 486
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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