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    JAZ10 jasmonate-zim-domain protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831162, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ10
    Official Full Name
    jasmonate-zim-domain protein 10
    Primary source
    TAIR:AT5G13220
    Locus tag
    AT5G13220
    See related
    Araport:AT5G13220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; jasmonate-zim-domain protein 10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9
    Summary
    Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.
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    Genomic context

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    See JAZ10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4218786..4221077)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Uncharacterized conserved protein UCP015417, vWA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linking phytochrome to plant immunity: low red : far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin. Cargnel MD, et al. New Phytol, 2014 Oct. PMID 25236170
    2. Exploring growth-defence trade-offs in Arabidopsis: phytochrome B inactivation requires JAZ10 to suppress plant immunity but not to trigger shade-avoidance responses. Cerrudo I, et al. Plant Cell Environ, 2017 May. PMID 27943325
    3. Low red/far-red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism. Cerrudo I, et al. Plant Physiol, 2012 Apr. PMID 22371506, Free PMC Article
    4. To grow or defend? Low red : far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability. Leone M, et al. New Phytol, 2014 Oct. PMID 25103816
    5. Identification and validation of the wound and insect bite early inducible promoter from Arabidopsis thaliana. Mishra DK, et al. 3 Biotech, 2022 Mar. PMID 35251877, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. a null mutation of the JAZ10 gene in Arabidopsis did not affect plant growth nor did it suppress the shade-avoidance responses elicited by phyB inactivation.
      Title: Exploring growth-defence trade-offs in Arabidopsis: phytochrome B inactivation requires JAZ10 to suppress plant immunity but not to trigger shade-avoidance responses.
    2. JAZ1 and JAZ10 were the only JAZ proteins still showing interaction with the mutant MYC proteins, due to a second MYC interaction domain, besides the classical Jas domain.
      Title: Change of a conserved amino acid in the MYC2 and MYC3 transcription factors leads to release of JAZ repression and increased activity.
    3. JAZ10 plays a functional role in the link between phytochrome and jasmonate signaling.
      Title: Linking phytochrome to plant immunity: low red : far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin.
    4. Under conditions of competition for light, plants redirect resource allocation from defense to rapid elongation by promoting DELLA degradation and enhancing JAZ10 stability.
      Title: To grow or defend? Low red : far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability.
    5. Jasmonic acid-induced transcription and alternative splicing of JAZ10 premessenger RNA creates a regulatory circuit to attenuate jasmonic acid responses.
      Title: Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.
    6. These results suggest that the Low red/far-red effect, in contrast to the salicylic acid effect, requires a functional SCFCOI1-JASMONATE ZIM-DOMAIN (JAZ) JA receptor module.
      Title: Low red/far-red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism.
    7. Findings indicate that JAZ splice variants have reduced capacity to form stable complexes with COI1 in the presence of the bioactive stereoisomer of the hormone (3R,7S)-JA-Ile.
      Title: Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling.
    8. JAZ10.4 functions to dampen signal output in the presence of jasmonate and that the repressive activity of this splice variant depends on the ZIM/TIFY domain.
      Title: A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161241.2
    NM_001343260.1
    NM_001343261.1
    NM_001343262.1
    NM_121325.3
    NM_203046.3
    NM_203047.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of systemic acquired resistance IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    NOT involved_in response to auxin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in response to salicylic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 10
    NP_001154713.1
    • jasmonate-zim-domain protein 10; FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_568287.1
    • jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974775.1
    • jasmonate-zim-domain protein 10 (JAZ10); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974776.1
    • jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4218786..4221077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203046.3 → NP_974775.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974775.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCP4, A0A7G2FC88
      Conserved Domains (2) summary
      smart00979
      Location:98 → 132
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:168 → 185
      CCT_2; Divergent CCT motif

    2. NM_203047.3 → NP_974776.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCP4, A0A7G2FC88
      Conserved Domains (2) summary
      smart00979
      Location:98 → 132
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:168 → 185
      CCT_2; Divergent CCT motif

    3. NM_121325.3 → NP_568287.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568287.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0JPT8, Q3E9I1, Q3E9I2, Q93ZM9, Q9LYV4
      UniProtKB/TrEMBL
      A0A178UCD2, A0A5S9Y3Q0, A0A7G2FC88
      Conserved Domains (2) summary
      smart00979
      Location:98 → 132
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:168 → 192
      CCT_2; Divergent CCT motif

    4. NM_001343260.1 → NP_001330992.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE80, A0A1P8BCK0, A0A384LPD1
      Conserved Domains (1) summary
      cl05618
      Location:98 → 132
      tify; tify domain

    5. NM_001161241.2 → NP_001154713.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154713.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZM9
      Conserved Domains (1) summary
      smart00979
      Location:98 → 132
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

    6. NM_001343262.1 → NP_001330994.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCH9, A0A7G2FC88

    7. NM_001343261.1 → NP_001330993.1  jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFM1, A0A1P8BCI4, A0A384L6J5, A0A7G2FC88
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93ZM9.1

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