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    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821539, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    Primary source
    TAIR:AT3G20010
    Locus tag
    AT3G20010
    See related
    Araport:AT3G20010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHR27; chromatin remodeling 27; FRG1; SNF2-RING-HELICASE LIKE 1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (6970683..6976691)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase Neighboring gene translocase of the outer mitochondrial membrane 40 Neighboring gene ncRNA Neighboring gene Eukaryotic aspartyl protease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Groth M, et al. Proc Natl Acad Sci U S A, 2014 Dec 9. PMID 25425661, Free PMC Article
    2. SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis. Han YF, et al. Cell Res, 2014 Dec. PMID 25420628, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338440.1
    NM_001338443.1
    NM_001338444.1
    NM_001338445.1
    NM_001338446.1
    NM_112891.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within gene silencing by siRNA-directed DNA methylation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    NP_001319598.1
    • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins in 1867 species: Archae - 89; Bacteria - 7985; Metazoa - 5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other Eukaryotes - 3416 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6970683..6976691
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338441.1 → NP_001327757.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTA6

    2. NM_001338442.1 → NP_001327758.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTA7
      Conserved Domains (2) summary
      COG0553
      Location:3 → 779
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:15 → 369
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    3. NM_001338440.1 → NP_001319598.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTB0, Q9LHE4
      UniProtKB/TrEMBL
      A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 1045
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    4. NM_001338443.1 → NP_001327761.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTA5, A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 949
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    5. NM_001338444.1 → NP_001327760.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTB0, Q9LHE4
      UniProtKB/TrEMBL
      A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 1045
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    6. NM_112891.3 → NP_188635.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188635.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTB0, Q9LHE4
      UniProtKB/TrEMBL
      A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 1045
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    7. NM_001338445.1 → NP_001327759.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTA5, A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 949
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins

    8. NM_001338446.1 → NP_001327756.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTA5, A0A7G2ER88
      Conserved Domains (2) summary
      COG0553
      Location:269 → 949
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:281 → 635
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHE4.1

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