LOCUS NP_001319598 1047 aa linear PLN 20-OCT-2022
DEFINITION SNF2 domain-containing protein / helicase domain-containing protein
/ zinc finger protein-like protein [Arabidopsis thaliana].
ACCESSION NP_001319598
VERSION NP_001319598.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_001338440.1
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 1047)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (residues 1 to 1047)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 1047)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 1047)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE76318.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..1047
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
Protein 1..1047
/product="SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-like
protein"
/calculated_mol_wt=115344
Region <273..1025
/region_name="HepA"
/note="Superfamily II DNA or RNA helicase, SNF2 family
[Transcription, Replication, recombination, and repair];
COG0553"
/db_xref="CDD:440319"
Region 749..800
/region_name="RING-HC_CHR27-like"
/note="RING finger, HC subclass, found in Arabidopsis
thaliana protein CHROMATIN REMODELING 27 (CHR27) and
similar proteins; cd23142"
/db_xref="CDD:438504"
CDS 1..1047
/locus_tag="AT3G20010"
/gene_synonym="CHR27; chromatin remodeling 27; FRG1;
SNF2-RING-HELICASE LIKE 1"
/coded_by="NM_001338440.1:255..3398"
/inference="Similar to RNA sequence,
EST:INSD:AV539814.1,INSD:ES036605.1,INSD:ES055860.1,
INSD:ES089182.1,INSD:EL001050.1,INSD:CF773612.1,
INSD:AV551821.1,INSD:ES169733.1,INSD:ES011418.1,
INSD:ES041157.1,INSD:ES156363.1,INSD:AV546107.1,
INSD:BE524317.1,INSD:ES088048.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX825356.1"
/note="SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related;
FUNCTIONS IN: helicase activity, DNA binding, zinc ion
binding, ATP binding, nucleic acid binding; EXPRESSED IN:
16 plant structures; EXPRESSED DURING: 6 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type,
conserved site (InterPro:IPR017907), Zinc finger,
RING-type (InterPro:IPR001841), DEAD-like helicase,
N-terminal (InterPro:IPR014001), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related
(InterPro:IPR000330); BEST Arabidopsis thaliana protein
match is: SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
(TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins
in 1867 species: Archae - 89; Bacteria - 7985; Metazoa -
5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other
Eukaryotes - 3416 (source: NCBI BLink)."
/db_xref="GeneID:821539"
/db_xref="TAIR:AT3G20010"
/db_xref="Araport:AT3G20010"
ORIGIN
1 mdsaieissg sdsddevppq pvwpqtrtrm dptwlsrrpl ptvdsharae htnqappnga
61 ssdtsrpgvs kpftgngntv nsrissgsga dyvrlsseqa lkrtlppsfn spplparsgt
121 nnisnasgsr vgvdyerpls qqalkrtlpp sfnppplpsr sgtnnirnag gsrfgadysh
181 pavsavgnks tfgdhysgah aeigiqrgvn gvrilppslt hgtsasvlhh agssdpmhrf
241 gggedrnpdn derlvyqaal qvlnqpmtes dlppgtlsvp lmrhqkiala wmfqketssf
301 ncpggiladd qglgktvsti alilkqkivs qlksessckq etealvldad desdnakhes
361 gshvkpelkv ssnsetsvls acgndendss dmekaedeea nsstrafqwk rpaagtlivc
421 pasvvrqwar eldekvsees klsvlvyhgs nrtkdpnela eydvvvttya ivtneapnkf
481 lvdedendek ntdryglasg fsnnkkrkvv vgaskkskrr grkstndtss epdcgplgkv
541 gwfrivldea qtiknyrtqm arscctlrak rrwclsgtpi qntiddlysy frflrydpya
601 vyksfystik vpisrnscqg ykklqavlra imlrrtkgtl ldgkpiinlp pkvvnlsqvd
661 fsvaersfyk kleadsrsqf kayadagtls qnyanillll lrlrqacdhp qlvkrynsdp
721 vgkvseaavr rlprearsrl inrlesssai cyecneppek pvvtlcghif cyecvleyit
781 gdentcpvpr ckqqlardvv fsesslrnct sddsgcsssh dngldrsvfq krdfcsskik
841 avldilqsls qpdspnsaqh gqmpsssrpy ddddvtivep mrlhssspsq gavktiifsq
901 wtgmldlvel rilesgiefr rldgtmslaa rdravkefsk kpdvkvmlms lkagnlglnm
961 vaachvilld lwwnpttedq aidrahrigq trpvtvtrit ikdtvedril klqeekrtmv
1021 asafgeehgg ssatrltvdd lkylfmv
//