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SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_001319598.1

Identical Proteins FASTA Graphics 

LOCUS       NP_001319598            1047 aa            linear   PLN 20-OCT-2022
DEFINITION  SNF2 domain-containing protein / helicase domain-containing protein
            / zinc finger protein-like protein [Arabidopsis thaliana].
ACCESSION   NP_001319598
VERSION     NP_001319598.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_001338440.1
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 1047)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (residues 1 to 1047)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 1047)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 1047)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE76318.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     Protein         1..1047
                     /product="SNF2 domain-containing protein / helicase
                     domain-containing protein / zinc finger protein-like
                     protein"
                     /calculated_mol_wt=115344
     Region          <273..1025
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          749..800
                     /region_name="RING-HC_CHR27-like"
                     /note="RING finger, HC subclass, found in Arabidopsis
                     thaliana protein CHROMATIN REMODELING 27 (CHR27) and
                     similar proteins; cd23142"
                     /db_xref="CDD:438504"
     CDS             1..1047
                     /locus_tag="AT3G20010"
                     /gene_synonym="CHR27; chromatin remodeling 27; FRG1;
                     SNF2-RING-HELICASE LIKE 1"
                     /coded_by="NM_001338440.1:255..3398"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV539814.1,INSD:ES036605.1,INSD:ES055860.1,
                     INSD:ES089182.1,INSD:EL001050.1,INSD:CF773612.1,
                     INSD:AV551821.1,INSD:ES169733.1,INSD:ES011418.1,
                     INSD:ES041157.1,INSD:ES156363.1,INSD:AV546107.1,
                     INSD:BE524317.1,INSD:ES088048.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BX825356.1"
                     /note="SNF2 domain-containing protein / helicase
                     domain-containing protein / zinc finger protein-related;
                     FUNCTIONS IN: helicase activity, DNA binding, zinc ion
                     binding, ATP binding, nucleic acid binding; EXPRESSED IN:
                     16 plant structures; EXPRESSED DURING: 6 growth stages;
                     CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type,
                     conserved site (InterPro:IPR017907), Zinc finger,
                     RING-type (InterPro:IPR001841), DEAD-like helicase,
                     N-terminal (InterPro:IPR014001), DNA/RNA helicase,
                     C-terminal (InterPro:IPR001650), Helicase, superfamily
                     1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related
                     (InterPro:IPR000330); BEST Arabidopsis thaliana protein
                     match is: SNF2 domain-containing protein / helicase
                     domain-containing protein / zinc finger protein-related
                     (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins
                     in 1867 species: Archae - 89; Bacteria - 7985; Metazoa -
                     5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other
                     Eukaryotes - 3416 (source: NCBI BLink)."
                     /db_xref="GeneID:821539"
                     /db_xref="TAIR:AT3G20010"
                     /db_xref="Araport:AT3G20010"
ORIGIN      
        1 mdsaieissg sdsddevppq pvwpqtrtrm dptwlsrrpl ptvdsharae htnqappnga
       61 ssdtsrpgvs kpftgngntv nsrissgsga dyvrlsseqa lkrtlppsfn spplparsgt
      121 nnisnasgsr vgvdyerpls qqalkrtlpp sfnppplpsr sgtnnirnag gsrfgadysh
      181 pavsavgnks tfgdhysgah aeigiqrgvn gvrilppslt hgtsasvlhh agssdpmhrf
      241 gggedrnpdn derlvyqaal qvlnqpmtes dlppgtlsvp lmrhqkiala wmfqketssf
      301 ncpggiladd qglgktvsti alilkqkivs qlksessckq etealvldad desdnakhes
      361 gshvkpelkv ssnsetsvls acgndendss dmekaedeea nsstrafqwk rpaagtlivc
      421 pasvvrqwar eldekvsees klsvlvyhgs nrtkdpnela eydvvvttya ivtneapnkf
      481 lvdedendek ntdryglasg fsnnkkrkvv vgaskkskrr grkstndtss epdcgplgkv
      541 gwfrivldea qtiknyrtqm arscctlrak rrwclsgtpi qntiddlysy frflrydpya
      601 vyksfystik vpisrnscqg ykklqavlra imlrrtkgtl ldgkpiinlp pkvvnlsqvd
      661 fsvaersfyk kleadsrsqf kayadagtls qnyanillll lrlrqacdhp qlvkrynsdp
      721 vgkvseaavr rlprearsrl inrlesssai cyecneppek pvvtlcghif cyecvleyit
      781 gdentcpvpr ckqqlardvv fsesslrnct sddsgcsssh dngldrsvfq krdfcsskik
      841 avldilqsls qpdspnsaqh gqmpsssrpy ddddvtivep mrlhssspsq gavktiifsq
      901 wtgmldlvel rilesgiefr rldgtmslaa rdravkefsk kpdvkvmlms lkagnlglnm
      961 vaachvilld lwwnpttedq aidrahrigq trpvtvtrit ikdtvedril klqeekrtmv
     1021 asafgeehgg ssatrltvdd lkylfmv
//
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