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    LRRC38 leucine rich repeat containing 38 [ Cercocebus atys (sooty mangabey) ]

    Gene ID: 105593641, updated on 13-Mar-2024

    Summary

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    Gene symbol
    LRRC38
    Gene description
    leucine rich repeat containing 38
    See related
    Ensembl:ENSCATG00000035670
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cercocebus atys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
    Orthologs
    human mouse all
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    Genomic context

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    See LRRC38 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012001540.1 (245522..288879, complement)

    NW_012001540.1Genomic Context describing neighboring genes Neighboring gene PRAME family member 14 Neighboring gene PRAME family member 20 Neighboring gene bromodomain and WD repeat-containing protein 1 pseudogene Neighboring gene podoplanin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012001540.1 Unplaced Scaffold Reference Caty_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium channel activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane transporter binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caty_1.0

    Genomic

    1. NW_012001540.1 Reference Caty_1.0

      Range
      245522..288879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012077048.1 → XP_011932438.1  leucine-rich repeat-containing protein 38

      See identical proteins and their annotated locations for XP_011932438.1

      UniProtKB/TrEMBL
      A0A2K5MGF2
      Related
      ENSCATP00000024285.1, ENSCATT00000048509.1
      Conserved Domains (5) summary
      smart00013
      Location:27 → 58
      LRRNT; Leucine rich repeat N-terminal domain
      sd00031
      Location:58 → 81
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:38 → 56
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:58 → 116
      LRR_8; Leucine rich repeat
      cl15307
      Location:186 → 237
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
    Nucleotide Protein
    Heading Accession and Version

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