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Conserved domains on  [gi|795355922|ref|XP_011932438|]
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PREDICTED: leucine-rich repeat-containing protein 38 [Cercocebus atys]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12183770)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions; similar to Homo sapiens leucine-rich repeat-containing protein 38 that is auxiliary protein of the large-conductance, voltage and calcium-activated potassium channel (BK alpha)

Gene Ontology:  GO:0005515
PubMed:  14747988|11751054

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.79e-10

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 795355922   58 VRKLLVAGNRIQQIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
39-164 1.19e-09

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  39 TVDCSDRGLPSVPDPF-PLD-VRKLLVAGNRIQQIPEDFfifyGD---LVYLDFRNNSLRSLEEGtFSGSAKLVFLDLSY 113
Cdd:COG4886  163 SLDLSNNQLTDLPEELgNLTnLKELDLSNNQITDLPEPL----GNltnLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 795355922 114 NNLTQLGAgaFRSAGRLVKLSLANNNLAGVHEAAfeTLESLQVLELNDNNL 164
Cdd:COG4886  238 NQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQL 284
LRRCT super family cl47026
Leucine rich repeat C-terminal domain;
186-237 4.01e-04

Leucine rich repeat C-terminal domain;


The actual alignment was detected with superfamily member smart00082:

Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.41  E-value: 4.01e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 795355922   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.79e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 795355922   58 VRKLLVAGNRIQQIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-164 9.80e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.79  E-value: 9.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  57 DVRKLLVAGNRIQQIPEDFFIFyGDLVYLDFRNNSLRSLEEgTFSGSAKLVFLDLSYNNLTQLGAgAFRSAGRLVKLSLA 136
Cdd:COG4886  114 NLESLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLS 190

                         90       100
                 ....*....|....*....|....*...
gi 795355922 137 NNNLAGVHEAaFETLESLQVLELNDNNL 164
Cdd:COG4886  191 NNQITDLPEP-LGNLTNLEELDLSGNQL 217
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-164 1.19e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  39 TVDCSDRGLPSVPDPF-PLD-VRKLLVAGNRIQQIPEDFfifyGD---LVYLDFRNNSLRSLEEGtFSGSAKLVFLDLSY 113
Cdd:COG4886  163 SLDLSNNQLTDLPEELgNLTnLKELDLSNNQITDLPEPL----GNltnLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 795355922 114 NNLTQLGAgaFRSAGRLVKLSLANNNLAGVHEAAfeTLESLQVLELNDNNL 164
Cdd:COG4886  238 NQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQL 284
LRR_8 pfam13855
Leucine rich repeat;
109-164 4.53e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 51.76  E-value: 4.53e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 795355922  109 LDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAFETLESLQVLELNDNNL 164
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 45-165 3.55e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 44.65  E-value: 3.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  45 RGLPSVPdpfpLDVRKLLVAGNRIQQIP----EDFFIFYGDLVYLDFRNNSL-----RSLEEGtFSGSAKLVFLDLSYNN 115
Cdd:cd00116  130 KGLKDLP----PALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIgdagiRALAEG-LKANCNLEVLDLNNNG 204

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 795355922 116 LTQLGAGAFrsagrlvklslannnlagvhEAAFETLESLQVLELNDNNLR 165
Cdd:cd00116  205 LTDEGASAL--------------------AETLASLKSLEVLNLGDNNLT 234
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
42-165 4.94e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 44.69  E-value: 4.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  42 CSDR-GLPSVPDPFPLDVRKLLVAGNRIQQIPEDffiFYGDLVYLDFRNNSLRSLEEgTFSGSAKLvfLDLSYNNLTQLG 120
Cdd:PRK15370 184 RLKIlGLTTIPACIPEQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTSIPA-TLPDTIQE--MELSINRITELP 257

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 795355922 121 AgafRSAGRLVKLSLANNNLAgvheAAFETL-ESLQVLELNDNNLR 165
Cdd:PRK15370 258 E---RLPSALQSLDLFHNKIS----CLPENLpEELRYLSVYDNSIR 296
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-58 3.52e-04

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 37.30  E-value: 3.52e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 795355922    27 ACPAGCACTDPHtVDCSDRGLPSVPDPFPLDV 58
Cdd:smart00013   1 ACPAPCNCSGTA-VDCSGRGLTEVPLDLPPDT 31
LRRCT smart00082
Leucine rich repeat C-terminal domain;
186-237 4.01e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.41  E-value: 4.01e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 795355922   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
39-128 4.56e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 41.61  E-value: 4.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  39 TVDCSDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEdffIFYGDLVYLDFRNNSLRSLEEGTfsgSAKLVFLDLSYNNLTQ 118
Cdd:PRK15370 329 TLEAGENALTSLPASLPPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLVR 402

                         90
                 ....*....|..
gi 795355922 119 LGAG--AFRSAG 128
Cdd:PRK15370 403 LPESlpHFRGEG 414
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
58-116 2.79e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 2.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 795355922   58 VRKLLVAGNRIQQIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNL 116
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-164 9.80e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.79  E-value: 9.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  57 DVRKLLVAGNRIQQIPEDFFIFyGDLVYLDFRNNSLRSLEEgTFSGSAKLVFLDLSYNNLTQLGAgAFRSAGRLVKLSLA 136
Cdd:COG4886  114 NLESLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLS 190

                         90       100
                 ....*....|....*....|....*...
gi 795355922 137 NNNLAGVHEAaFETLESLQVLELNDNNL 164
Cdd:COG4886  191 NNQITDLPEP-LGNLTNLEELDLSGNQL 217
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-164 1.19e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  39 TVDCSDRGLPSVPDPF-PLD-VRKLLVAGNRIQQIPEDFfifyGD---LVYLDFRNNSLRSLEEGtFSGSAKLVFLDLSY 113
Cdd:COG4886  163 SLDLSNNQLTDLPEELgNLTnLKELDLSNNQITDLPEPL----GNltnLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 795355922 114 NNLTQLGAgaFRSAGRLVKLSLANNNLAGVHEAAfeTLESLQVLELNDNNL 164
Cdd:COG4886  238 NQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQL 284
LRR_8 pfam13855
Leucine rich repeat;
82-140 2.92e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.14  E-value: 2.92e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 795355922   82 LVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNL 140
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
109-164 4.53e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 51.76  E-value: 4.53e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 795355922  109 LDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAFETLESLQVLELNDNNL 164
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 45-165 3.55e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 44.65  E-value: 3.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  45 RGLPSVPdpfpLDVRKLLVAGNRIQQIP----EDFFIFYGDLVYLDFRNNSL-----RSLEEGtFSGSAKLVFLDLSYNN 115
Cdd:cd00116  130 KGLKDLP----PALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIgdagiRALAEG-LKANCNLEVLDLNNNG 204

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 795355922 116 LTQLGAGAFrsagrlvklslannnlagvhEAAFETLESLQVLELNDNNLR 165
Cdd:cd00116  205 LTDEGASAL--------------------AETLASLKSLEVLNLGDNNLT 234
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
42-165 4.94e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 44.69  E-value: 4.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  42 CSDR-GLPSVPDPFPLDVRKLLVAGNRIQQIPEDffiFYGDLVYLDFRNNSLRSLEEgTFSGSAKLvfLDLSYNNLTQLG 120
Cdd:PRK15370 184 RLKIlGLTTIPACIPEQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTSIPA-TLPDTIQE--MELSINRITELP 257

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 795355922 121 AgafRSAGRLVKLSLANNNLAgvheAAFETL-ESLQVLELNDNNLR 165
Cdd:PRK15370 258 E---RLPSALQSLDLFHNKIS----CLPENLpEELRYLSVYDNSIR 296
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 82-164 2.00e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 42.34  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  82 LVYLDFRNNSLRSLE----EGTFSGSAKLVFLDLSYNNLTQLGAGAFRSA-----GRLVKLSLANNNLAGVheaAFETL- 151
Cdd:cd00116  195 LEVLDLNNNGLTDEGasalAETLASLKSLEVLNLGDNNLTDAGAAALASAllspnISLLTLSLSCNDITDD---GAKDLa 271

                         90
                 ....*....|....*....
gi 795355922 152 ------ESLQVLELNDNNL 164
Cdd:cd00116  272 evlaekESLLELDLRGNKF 290
LRRNT smart00013
Leucine rich repeat N-terminal domain;
27-58 3.52e-04

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 37.30  E-value: 3.52e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 795355922    27 ACPAGCACTDPHtVDCSDRGLPSVPDPFPLDV 58
Cdd:smart00013   1 ACPAPCNCSGTA-VDCSGRGLTEVPLDLPPDT 31
LRRCT smart00082
Leucine rich repeat C-terminal domain;
186-237 4.01e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.41  E-value: 4.01e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 795355922   186 NPWLCDCDFAHLFSWIQENASKLPKglDEIQCSLPmESRRISLRELSEASFS 237
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEHLQDP--VDLRCASP-SSLRGPLLELLHSEFK 49
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
39-128 4.56e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 41.61  E-value: 4.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  39 TVDCSDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEdffIFYGDLVYLDFRNNSLRSLEEGTfsgSAKLVFLDLSYNNLTQ 118
Cdd:PRK15370 329 TLEAGENALTSLPASLPPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLVR 402

                         90
                 ....*....|..
gi 795355922 119 LGAG--AFRSAG 128
Cdd:PRK15370 403 LPESlpHFRGEG 414
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 27-55 6.36e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 36.45  E-value: 6.36e-04
                          10        20
                  ....*....|....*....|....*....
gi 795355922   27 ACPAGCACTDPHtVDCSDRGLPSVPDPFP 55
Cdd:pfam01462   1 ACPVPCHCSATV-VNCSDRGLTAVPRDLP 28
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 50-164 3.84e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.68  E-value: 3.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  50 VPDPFPLD-VRKLLVAGNRIQQIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAG 128
Cdd:PLN00113 468 LPDSFGSKrLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 795355922 129 RLVKLSLANNNLAGVHEAAFETLESLQVLELNDNNL 164
Cdd:PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 88-164 5.17e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.29  E-value: 5.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 795355922  88 RNNSLRSLEEgtFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAFETLESLQVLELNDNNL 164
Cdd:PLN00113 461 RNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 70-164 7.68e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 37.91  E-value: 7.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 795355922  70 QIPEDFFIFYGDLVYLDFRNNSLR-SLEEGTFSGsakLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAF 148
Cdd:PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTgSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

                         90
                 ....*....|....*.
gi 795355922 149 ETLESLQVLELNDNNL 164
Cdd:PLN00113 185 TNLTSLEFLTLASNQL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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