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    LGI4 leucine rich repeat LGI family member 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718426, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LGI4provided by VGNC
    Official Full Name
    leucine rich repeat LGI family member 4provided by VGNC
    Primary source
    VGNC:VGNC:111975
    Locus tag
    EGK_10464
    See related
    Ensembl:ENSMMUG00000022129
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LGI4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (34550800..34570106, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (30992984..31011755)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene hepsin Neighboring gene uncharacterized LOC106994727 Neighboring gene FXYD domain containing ion transport regulator 3 Neighboring gene FXYD domain containing ion transport regulator 1 Neighboring gene FXYD domain containing ion transport regulator 7 Neighboring gene FXYD domain containing ion transport regulator 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in myelination in peripheral nervous system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat LGI family member 4
    Names
    Leucine-rich glioma-inactivated protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      34550800..34570106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015123551.2 → XP_014979037.1  leucine-rich repeat LGI family member 4 isoform X3

      UniProtKB/TrEMBL
      H9F6S1
      Conserved Domains (5) summary
      TIGR00864
      Location:144 → 219
      PCC; polycystin cation channel protein
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:180 → 218
      LRR_RI; leucine-rich repeat [structural motif]
      pfam03736
      Location:409 → 449
      EPTP; EPTP domain
      pfam13855
      Location:113 → 173
      LRR_8; Leucine rich repeat

    2. XM_028840229.1 → XP_028696062.1  leucine-rich repeat LGI family member 4 isoform X6

      UniProtKB/TrEMBL
      H9F6S1
      Conserved Domains (4) summary
      TIGR00864
      Location:57 → 132
      PCC; polycystin cation channel protein
      sd00031
      Location:28 → 51
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:322 → 362
      EPTP; EPTP domain
      pfam13855
      Location:26 → 86
      LRR_8; Leucine rich repeat

    3. XM_015123550.2 → XP_014979036.1  leucine-rich repeat LGI family member 4 isoform X2

      UniProtKB/TrEMBL
      H9F6S1
      Conserved Domains (3) summary
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:414 → 454
      EPTP; EPTP domain
      pfam13855
      Location:113 → 173
      LRR_8; Leucine rich repeat

    4. XM_015123549.2 → XP_014979035.1  leucine-rich repeat LGI family member 4 isoform X1

      UniProtKB/TrEMBL
      F7H5I3, H9F6S1
      Related
      ENSMMUP00000029139.4, ENSMMUT00000031132.4
      Conserved Domains (5) summary
      TIGR00864
      Location:168 → 243
      PCC; polycystin cation channel protein
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:204 → 242
      LRR_RI; leucine-rich repeat [structural motif]
      pfam03736
      Location:433 → 473
      EPTP; EPTP domain
      pfam13855
      Location:113 → 173
      LRR_8; Leucine rich repeat

    5. XM_015123553.2 → XP_014979039.1  leucine-rich repeat LGI family member 4 isoform X5

      UniProtKB/TrEMBL
      H9F6S1
      Conserved Domains (5) summary
      TIGR00864
      Location:81 → 156
      PCC; polycystin cation channel protein
      sd00031
      Location:28 → 51
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:117 → 155
      LRR_RI; leucine-rich repeat [structural motif]
      pfam03736
      Location:346 → 386
      EPTP; EPTP domain
      pfam13855
      Location:26 → 86
      LRR_8; Leucine rich repeat

    6. XM_015123552.2 → XP_014979038.1  leucine-rich repeat LGI family member 4 isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZCS9, A0A8J8XHE8, G7NM39, H9F6S1
      Related
      ENSMMUP00000063391.1, ENSMMUT00000083834.1
      Conserved Domains (5) summary
      TIGR00864
      Location:131 → 206
      PCC; polycystin cation channel protein
      sd00031
      Location:54 → 77
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:29 → 53
      LRR_RI; leucine-rich repeat [structural motif]
      pfam03736
      Location:396 → 436
      EPTP; EPTP domain
      pfam13855
      Location:76 → 136
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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