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    CPSF4 cleavage and polyadenylation specific factor 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708119, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CPSF4provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 4provided by VGNC
    Primary source
    VGNC:VGNC:71474
    Locus tag
    EGK_13489
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CPSF4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (41550205..41568893)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (124876976..124895604)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat-containing protein 1, mitochondrial Neighboring gene SAP domain-containing ribonucleoprotein-like Neighboring gene ATP synthase membrane subunit f Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 4
    Names
    cleavage and polyadenylation specific factor 4, 30kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257618.1 → NP_001244547.1  cleavage and polyadenylation specificity factor subunit 4

      See identical proteins and their annotated locations for NP_001244547.1

      Status: PROVISIONAL

      Source sequence(s)
      JU332627
      UniProtKB/TrEMBL
      H9FP23
      Conserved Domains (2) summary
      COG5084
      Location:25 → 176
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      COG5222
      Location:201 → 233
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      41550205..41568893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134315.1 → XP_014989801.1  cleavage and polyadenylation specificity factor subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YI44, F7BI49, G7MNR2
      Conserved Domains (2) summary
      COG5084
      Location:25 → 211
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      COG5222
      Location:226 → 258
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    2. XM_015134318.1 → XP_014989804.1  cleavage and polyadenylation specificity factor subunit 4 isoform X4

      Conserved Domains (2) summary
      COG5084
      Location:25 → 176
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      COG5222
      Location:200 → 232
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    3. XM_015134316.1 → XP_014989802.1  cleavage and polyadenylation specificity factor subunit 4 isoform X2

      Conserved Domains (1) summary
      COG5084
      Location:25 → 132
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

    4. XM_015134317.1 → XP_014989803.1  cleavage and polyadenylation specificity factor subunit 4 isoform X3

      Conserved Domains (2) summary
      smart00356
      Location:63 → 88
      ZnF_C3H1; zinc finger
      COG5084
      Location:25 → 132
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

    5. XM_028844958.1 → XP_028700791.1  cleavage and polyadenylation specificity factor subunit 4 isoform X6

      Conserved Domains (2) summary
      COG5084
      Location:2 → 123
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      COG5222
      Location:148 → 180
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    6. XM_028844957.1 → XP_028700790.1  cleavage and polyadenylation specificity factor subunit 4 isoform X5

      Conserved Domains (2) summary
      COG5084
      Location:2 → 158
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      COG5222
      Location:173 → 205
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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