cleavage and polyadenylation specificity factor subunit 4 isoform X2 [Macaca mulatta]
zinc finger CCCH domain-containing protein( domain architecture ID 708395)
zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YTH1 super family | cl25862 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
25-132 | 1.31e-23 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; The actual alignment was detected with superfamily member COG5084: Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 96.48 E-value: 1.31e-23
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
25-132 | 1.31e-23 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 96.48 E-value: 1.31e-23
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
41-119 | 1.03e-07 | |||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 49.00 E-value: 1.03e-07
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ZnF_C3H1 | smart00356 | zinc finger; |
63-88 | 4.46e-05 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 39.53 E-value: 4.46e-05
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
25-132 | 1.31e-23 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 96.48 E-value: 1.31e-23
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
41-119 | 1.03e-07 | |||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 49.00 E-value: 1.03e-07
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YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
29-159 | 9.94e-07 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 48.71 E-value: 9.94e-07
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ZnF_C3H1 | smart00356 | zinc finger; |
63-88 | 4.46e-05 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 39.53 E-value: 4.46e-05
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
68-86 | 1.00e-03 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 35.47 E-value: 1.00e-03
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Blast search parameters | ||||
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