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    DUF6 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819336, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF6
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6)
    Primary source
    TAIR:AT2G47230
    Locus tag
    AT2G47230
    See related
    Araport:AT2G47230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF6; DOMAIN OF UNKNOWN FUNCTION 724 6; T8I13.7
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
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    Genomic context

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    See DUF6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (19386966..19390234)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5) Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene long chain acyl-CoA synthetase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. Zhou X, et al. J Integr Plant Biol, 2022 Dec. PMID 36149781
    2. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202840.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6)
    NP_001189769.1
    • DOMAIN OF UNKNOWN FUNCTION 724 6 (DUF6); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT1G26540.1).
    NP_182245.1
    • DOMAIN OF UNKNOWN FUNCTION 724 6 (DUF6); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT1G26540.1); Has 654 Blast hits to 571 proteins in 116 species: Archae - 0; Bacteria - 26; Metazoa - 156; Fungi - 34; Plants - 356; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19386966..19390234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130291.3 → NP_182245.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182245.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22897
      UniProtKB/TrEMBL
      A0A178VQT3, A0A5S9X7P7, A0A7G2EHZ9
      Conserved Domains (3) summary
      pfam05266
      Location:513 → 700
      DUF724; Protein of unknown function (DUF724)
      cd20405
      Location:5 → 71
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
      cd20406
      Location:82 → 128
      Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    2. NM_001202840.1 → NP_001189769.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189769.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EHZ9, F4IL23
      Conserved Domains (5) summary
      smart00743
      Location:79 → 134
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:521 → 707
      DUF724; Protein of unknown function (DUF724)
      pfam05641
      Location:8 → 74
      Agenet; Agenet domain
      cd16269
      Location:667 → 678
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:619 → 698
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22897.1

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