agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) [Arabidopsis thaliana]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
DUF724 | pfam05266 | Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
521-708 | 3.52e-94 | ||||
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil. : Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 289.94 E-value: 3.52e-94
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
5-71 | 3.11e-21 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. : Pssm-ID: 410476 Cd Length: 65 Bit Score: 87.70 E-value: 3.11e-21
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
82-128 | 3.72e-17 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. : Pssm-ID: 410477 Cd Length: 47 Bit Score: 75.32 E-value: 3.72e-17
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
150-218 | 1.09e-16 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. : Pssm-ID: 410476 Cd Length: 65 Bit Score: 74.60 E-value: 1.09e-16
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
227-273 | 3.09e-15 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. : Pssm-ID: 410477 Cd Length: 47 Bit Score: 69.93 E-value: 3.09e-15
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Name | Accession | Description | Interval | E-value | ||||
DUF724 | pfam05266 | Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
521-708 | 3.52e-94 | ||||
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil. Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 289.94 E-value: 3.52e-94
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
5-71 | 3.11e-21 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410476 Cd Length: 65 Bit Score: 87.70 E-value: 3.11e-21
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
82-128 | 3.72e-17 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410477 Cd Length: 47 Bit Score: 75.32 E-value: 3.72e-17
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
150-218 | 1.09e-16 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410476 Cd Length: 65 Bit Score: 74.60 E-value: 1.09e-16
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
227-273 | 3.09e-15 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410477 Cd Length: 47 Bit Score: 69.93 E-value: 3.09e-15
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
8-71 | 2.65e-14 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 67.72 E-value: 2.65e-14
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
79-134 | 2.04e-13 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 65.04 E-value: 2.04e-13
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
223-279 | 4.32e-13 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 64.27 E-value: 4.32e-13
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
153-218 | 3.42e-10 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 56.17 E-value: 3.42e-10
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
83-129 | 9.52e-05 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 40.76 E-value: 9.52e-05
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GBP_C | cd16269 | Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
619-698 | 5.22e-04 | ||||
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines. Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 5.22e-04
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
148-219 | 5.19e-03 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 35.76 E-value: 5.19e-03
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SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-703 | 6.03e-03 | ||||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 6.03e-03
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Name | Accession | Description | Interval | E-value | ||||
DUF724 | pfam05266 | Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
521-708 | 3.52e-94 | ||||
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil. Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 289.94 E-value: 3.52e-94
|
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
5-71 | 3.11e-21 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410476 Cd Length: 65 Bit Score: 87.70 E-value: 3.11e-21
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
82-128 | 3.72e-17 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410477 Cd Length: 47 Bit Score: 75.32 E-value: 3.72e-17
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Tudor_Agenet_AtDUF_rpt1_3 | cd20405 | first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ... |
150-218 | 1.09e-16 | ||||
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410476 Cd Length: 65 Bit Score: 74.60 E-value: 1.09e-16
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Tudor_Agenet_AtDUF_rpt2_4 | cd20406 | second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ... |
227-273 | 3.09e-15 | ||||
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Pssm-ID: 410477 Cd Length: 47 Bit Score: 69.93 E-value: 3.09e-15
|
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
8-71 | 2.65e-14 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 67.72 E-value: 2.65e-14
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
79-134 | 2.04e-13 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 65.04 E-value: 2.04e-13
|
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
223-279 | 4.32e-13 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 64.27 E-value: 4.32e-13
|
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
153-218 | 3.42e-10 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 56.17 E-value: 3.42e-10
|
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Agenet | pfam05641 | Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ... |
83-129 | 9.52e-05 | ||||
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins. Pssm-ID: 461700 Cd Length: 61 Bit Score: 40.76 E-value: 9.52e-05
|
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GBP_C | cd16269 | Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
619-698 | 5.22e-04 | ||||
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines. Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 5.22e-04
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GBP_C | pfam02841 | Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
619-698 | 5.16e-03 | ||||
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 39.58 E-value: 5.16e-03
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Agenet | smart00743 | Tudor-like domain present in plant sequences; Domain in plant sequences with possible ... |
148-219 | 5.19e-03 | ||||
Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions. Pssm-ID: 214798 Cd Length: 59 Bit Score: 35.76 E-value: 5.19e-03
|
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SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-703 | 6.03e-03 | ||||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 6.03e-03
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Blast search parameters | ||||
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