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    pax2a paired box 2a [ Danio aesculapii ]

    Gene ID: 130239886, updated on 27-Mar-2024

    Summary

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    Gene symbol
    pax2a
    Gene description
    paired box 2a
    See related
    EnsemblRapid:ENSDAEG00005005541
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio aesculapii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    human zebrafish all
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    Genomic context

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    See pax2a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_05 current fDanAes4.1 (GCF_903798145.1) 13 NC_079447.1 (23508040..23541540, complement)

    Chromosome 13 - NC_079447.1Genomic Context describing neighboring genes Neighboring gene hypoxia inducible factor 1 subunit alpha inhibitor Neighboring gene CUE domain containing 2 Neighboring gene uncharacterized LOC130239891 Neighboring gene carbohydrate (chondroitin 6) sulfotransferase 3a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_079447.1 Chromosome 13 Reference fDanAes4.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_903798145.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fDanAes4.1

    Genomic

    1. NC_079447.1 Reference fDanAes4.1

      Range
      23508040..23541540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056471257.1 → XP_056327232.1  paired box protein Pax-2a isoform X7

      Related
      ENSDAEP00005012648.1, ENSDAET00005013054.1

    2. XM_056471258.1 → XP_056327233.1  paired box protein Pax-2a isoform X8

      Related
      ENSDAEP00005012644.1, ENSDAET00005013050.1

    3. XM_056471252.1 → XP_056327227.1  paired box protein Pax-2a isoform X2

    4. XM_056471254.1 → XP_056327229.1  paired box protein Pax-2a isoform X4

    5. XM_056471255.1 → XP_056327230.1  paired box protein Pax-2a isoform X5

    6. XM_056471256.1 → XP_056327231.1  paired box protein Pax-2a isoform X6

      Related
      ENSDAEP00005012645.1, ENSDAET00005013051.1

    7. XM_056471251.1 → XP_056327226.1  paired box protein Pax-2a isoform X1

    8. XM_056471253.1 → XP_056327228.1  paired box protein Pax-2a isoform X3

    Nucleotide Protein
    Heading Accession and Version

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