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NCBI Reference Sequence: XM_056471251.1
FASTA Graphics
LOCUS XM_056471251 4313 bp mRNA linear VRT 27-MAY-2023 DEFINITION PREDICTED: Danio aesculapii paired box 2a (pax2a), transcript variant X1, mRNA. ACCESSION XM_056471251 VERSION XM_056471251.1 DBLINK BioProject: PRJNA975892 KEYWORDS RefSeq. SOURCE Danio aesculapii ORGANISM Danio aesculapii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079447) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_903798145.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/25/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4313 /organism="Danio aesculapii" /mol_type="mRNA" /db_xref="taxon:1142201" /chromosome="13" gene 1..4313 /gene="pax2a" /note="paired box 2a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins" /db_xref="GeneID:130239886" CDS 519..1994 /gene="pax2a" /codon_start=1 /product="paired box protein Pax-2a isoform X1" /protein_id="XP_056327226.1" /db_xref="GeneID:130239886" /translation="MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELA HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK RQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTA GHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIG YYGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKP EQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVSQSYPVVTESHSSSMCVKQEPHEA SLAPFTPSSLAVSGLAELLPLQPSVSVDASTPCYGAYAHHAPSYCQYASQPIIAGREM ASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSNPAL LMPHPGAPGLPLLPLPMTATSYHRSPVKLQDHGRGLHIVPV" polyA_site 4313 /gene="pax2a" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtctcagccc aaagcttcta acaggcacat cccattcttg aagagagggg gaccgagaga 61 cactcgccgt gtccatgttt tttcctgtca ttcccgcacg aatctgactg tacccctcag 121 actgttcaga ccagaaacgc ttctccatat cgaggaattt acactgcagt ttcaccagag 181 gacactggag gagacgcaac cactaatgct tgcagtccct taaatatgta gctaacaaat 241 attaactcaa cgattgatta cgctaacgtt cctgcgtgaa agatttttaa gagaccagtg 301 caggacatga tctgcacctg accagcctcg tgtcttcgtt gaatggactg atcagcacga 361 gataaagttc gtcgcgcgct gaacaacttc ttctgtacac tggcatcgga agcaccgcgc 421 tttgaaagga tagcgatctt tattaatttc aattaaagct acataatcaa ggcgagacgg 481 cgacctcagt cgattatctt tccttccttt gctatcccat ggatattcac tgcaaagcag 541 accccttctc ggcgatgcac cggcacggcg gtgtgaacca gctaggaggg gtgtttgtga 601 atggcagacc cctacctgac gtggtcaggc aaagaatcgt ggagctcgcg caccaaggag 661 tcagaccttg tgacatttca agacaactac gggtcagcca tggctgtgtc agcaaaattc 721 tcggaagata ttatgaaacc ggcagtatta aacctggagt aattgggggg tccaaaccaa 781 aagtggcgac gcccaaagtt gtggaaaaaa tcgcagaata caagcggcaa aatccaacaa 841 tgttcgcctg ggagatcaga gaccgactct tggccgaagg cgtttgtgac aacgacacag 901 taccaagtgt ttcatctata aacaggataa ttcgaaccaa agttcagcaa cctttccacc 961 catcctccga cggcacagga acgcctcttt ccacagcggg acacactata gtgcccagca 1021 cagcctcccc acctgtgtca agcgcttcca atgaccccgt ggggtcctac tctattaatg 1081 gcatcctagg aatccctcgc tccaacggcg aaaagagaaa acgtgatgat gttctctgga 1141 gtggcaacca cttggatggg aggaaaatag gatattatgg ttcagatggc tctggcccta 1201 acagtgattc tcagggtagt gtggagagtt tacggaagca cctgagggcc gatgccttca 1261 ctcaacagca gctggaggct ctggatcggg tgtttgagcg gccgtcatac cccgacgtct 1321 tccccacgtc agaacacatc aagccagagc aggctaatga gtactcgcta ccagcactga 1381 accctggact ggacgaagtc aagcccagtc tgtcaaccag cgtcagctca gatttgggct 1441 ccagcgtgtc acagagctac ccggtagtga cagagtcaca ttcatcctcc atgtgcgtta 1501 agcaggagcc gcatgaggct tccctggctc ctttcacccc ttcctcactg gcagtgtcgg 1561 gccttgcgga actgttgccc ctccagccca gcgtgtcagt agacgcctcc accccctgct 1621 acggtgccta tgcccatcat gcgcccagct actgccagta tgcaagccag cctattatag 1681 caggtcgaga gatggcgagc acgaccctac caggataccc acctcacgtt ccccccactg 1741 ggcagggcag ctaccccacc tctacacttg ctggaatggt gcctggaagc gacttttcag 1801 gaaatcccta ctctcacccg cagtacacaa cttacaatga agcttggcgg ttcagcaacc 1861 ccgcgttatt aatgccgcat cccggggctc cgggcctccc actgctgcca ctgcctatga 1921 ccgccactag ttaccatcgc agcccagtca aactgcagga ccacggccgc ggcctccata 1981 tcgtacccgt ctgaatggtc agagggattg aagatggata cgccatcttc actttcatgg 2041 agccgagatc cgatttggag ggtcaagcaa cagcggacat ccactacatt ccccctttgg 2101 caccatcact gaactatttc ctgaaagact ttgaaagatt ctacgaaaat atatatatta 2161 tacgagatat aaaacaagac gaaccgtgtg aagaactacg aagtaaacaa ttgatgtgct 2221 gttgtttttt ttttctctcc atttttcccc cattctctct caatcaatca aatacattcc 2281 tttacatact gtatttagca tcgctaacac acacaacaca cacgcaaggt tgcctgaggc 2341 ctttacatca tttcactagt gtcttacctc tcacggacgt gtcagaaaac tgcagtattg 2401 ctccattttc tgtcaaacag acaagtgtaa ctgttttaga agccatctct ctgactcgtg 2461 gtatgaagct accaacattt tctgtgatac acaatcaaaa acgggggaag aacaaaaaaa 2521 agaagattaa aacaggtcag ttgatgtatg tgacctgaaa agaaaaccgt atattaaatt 2581 attgttttgg tttcgctgat ggtttgtgtg cgtgtgtgca tttgtgtgtc atacattttc 2641 gggatactca ttatcggtgc cgctattttc ttgtttgcac tattttgcat tactggattt 2701 ataagtacaa ctgaattacg acttttgtca gatgttatat ttaagcaaaa ggaatcgaga 2761 aagcaacgca acgtcgaaca aaaaatacac ttgctgtatg ttaggaacta gcctttatct 2821 gtcattcagt aaagcgtttt tgtaactgag accgaacgac tggctcagta ccaaagtaat 2881 cattagcagt cagttttaca agttcaacaa atgccttaca gcttttttta ttattattta 2941 atttttttta tggtttggct ttggtcctga gaggtagaca tgcatgtaac ccttctgtgt 3001 ggtggaacaa aacgcgagga tagaaatgga aacggttcat acatacgctc ctggaaatgt 3061 aaagtgaatg tactttatac cacgtttgcc aaagacttag tttgatattt aatattttat 3121 ttgctgtatc tgtcaataaa acagtattat gttttaatag tagtcaatac tgattgtatg 3181 tggtaatgtt gaagaaaaag gaaaacgatc catatccccc ctcctgccca acacacagcg 3241 atgtacacat taaaaaaagg tgaattctgt tactcaaagg tatgtcattt gcaacaaact 3301 gctgctttgt agaatgattt tgtgtataat gtgaaaacaa ttcttcgatg tatataagat 3361 cacctacatt tcaccattgc agtatcgtac taatttactg attccatttg tagatatgag 3421 aattgaaaga agaagaaaaa aaagattgac attacatttg tgtcttcaat gtgttgtgct 3481 tttgcagaga cgcacaacta aaagtttgga accgccgtgg ttcggtgggt ttcagatgct 3541 gtcaccacat gtgcggctgt ttgtatgttt tgttttggtt cacttttact tgttcatact 3601 gtttaagtct ctatgcaaat caagtaaaat ggtattctgt attctccttt attactgcgt 3661 tcagttttac ccttcatttt aaatcatgcc taaatcctgt attgaggata atcctgtaga 3721 cgcaaacaaa tacatttcac atgcctgggt ttgtggattg tttttgtact ttggccctta 3781 agagttgaac acaacacttt agaattgttt tttttttttt tttaaatgtt aagttaaagt 3841 tacattactg cagatgacac aaaatgtatg gcatgcaaag gaaaaaatga caacaaataa 3901 tataactata cttaaattta tcgtacacac agtacaacca ctagttctaa ctcacacaaa 3961 acagaaaaaa tatatattat ttgcatattt ttcattttat ttccatatcc aggttaaact 4021 tttggaatga agattctaac cctgcactca ccgcaatcca gatatgccta tggaaacatt 4081 tacttgacag ttttccccta aacaagccaa cagcagcaga ggttaaagca gaggctcctt 4141 tcattaaata atgcaaaata tgtataacaa gcataatctg ttaagatcat aaaactaatc 4201 catgatgaac aaatgtaaca aaaagcaaca tggcctcagc caacactatc ccacttctgt 4261 ccagttctct ctctctattt gtgcatatca gaaataaatt tttttctatg tca //
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