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PREDICTED: Danio aesculapii paired box 2a (pax2a), transcript variant X1, mRNA

NCBI Reference Sequence: XM_056471251.1

FASTA Graphics 

LOCUS       XM_056471251            4313 bp    mRNA    linear   VRT 27-MAY-2023
DEFINITION  PREDICTED: Danio aesculapii paired box 2a (pax2a), transcript
            variant X1, mRNA.
ACCESSION   XM_056471251
VERSION     XM_056471251.1
DBLINK      BioProject: PRJNA975892
KEYWORDS    RefSeq.
SOURCE      Danio aesculapii
  ORGANISM  Danio aesculapii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_079447) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_903798145.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/25/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4313
                     /organism="Danio aesculapii"
                     /mol_type="mRNA"
                     /db_xref="taxon:1142201"
                     /chromosome="13"
     gene            1..4313
                     /gene="pax2a"
                     /note="paired box 2a; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 Proteins"
                     /db_xref="GeneID:130239886"
     CDS             519..1994
                     /gene="pax2a"
                     /codon_start=1
                     /product="paired box protein Pax-2a isoform X1"
                     /protein_id="XP_056327226.1"
                     /db_xref="GeneID:130239886"
                     /translation="MDIHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELA
                     HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK
                     RQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFHPSSDGTGTPLSTA
                     GHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIG
                     YYGSDGSGPNSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPSYPDVFPTSEHIKP
                     EQANEYSLPALNPGLDEVKPSLSTSVSSDLGSSVSQSYPVVTESHSSSMCVKQEPHEA
                     SLAPFTPSSLAVSGLAELLPLQPSVSVDASTPCYGAYAHHAPSYCQYASQPIIAGREM
                     ASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSGNPYSHPQYTTYNEAWRFSNPAL
                     LMPHPGAPGLPLLPLPMTATSYHRSPVKLQDHGRGLHIVPV"
     polyA_site      4313
                     /gene="pax2a"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtctcagccc aaagcttcta acaggcacat cccattcttg aagagagggg gaccgagaga
       61 cactcgccgt gtccatgttt tttcctgtca ttcccgcacg aatctgactg tacccctcag
      121 actgttcaga ccagaaacgc ttctccatat cgaggaattt acactgcagt ttcaccagag
      181 gacactggag gagacgcaac cactaatgct tgcagtccct taaatatgta gctaacaaat
      241 attaactcaa cgattgatta cgctaacgtt cctgcgtgaa agatttttaa gagaccagtg
      301 caggacatga tctgcacctg accagcctcg tgtcttcgtt gaatggactg atcagcacga
      361 gataaagttc gtcgcgcgct gaacaacttc ttctgtacac tggcatcgga agcaccgcgc
      421 tttgaaagga tagcgatctt tattaatttc aattaaagct acataatcaa ggcgagacgg
      481 cgacctcagt cgattatctt tccttccttt gctatcccat ggatattcac tgcaaagcag
      541 accccttctc ggcgatgcac cggcacggcg gtgtgaacca gctaggaggg gtgtttgtga
      601 atggcagacc cctacctgac gtggtcaggc aaagaatcgt ggagctcgcg caccaaggag
      661 tcagaccttg tgacatttca agacaactac gggtcagcca tggctgtgtc agcaaaattc
      721 tcggaagata ttatgaaacc ggcagtatta aacctggagt aattgggggg tccaaaccaa
      781 aagtggcgac gcccaaagtt gtggaaaaaa tcgcagaata caagcggcaa aatccaacaa
      841 tgttcgcctg ggagatcaga gaccgactct tggccgaagg cgtttgtgac aacgacacag
      901 taccaagtgt ttcatctata aacaggataa ttcgaaccaa agttcagcaa cctttccacc
      961 catcctccga cggcacagga acgcctcttt ccacagcggg acacactata gtgcccagca
     1021 cagcctcccc acctgtgtca agcgcttcca atgaccccgt ggggtcctac tctattaatg
     1081 gcatcctagg aatccctcgc tccaacggcg aaaagagaaa acgtgatgat gttctctgga
     1141 gtggcaacca cttggatggg aggaaaatag gatattatgg ttcagatggc tctggcccta
     1201 acagtgattc tcagggtagt gtggagagtt tacggaagca cctgagggcc gatgccttca
     1261 ctcaacagca gctggaggct ctggatcggg tgtttgagcg gccgtcatac cccgacgtct
     1321 tccccacgtc agaacacatc aagccagagc aggctaatga gtactcgcta ccagcactga
     1381 accctggact ggacgaagtc aagcccagtc tgtcaaccag cgtcagctca gatttgggct
     1441 ccagcgtgtc acagagctac ccggtagtga cagagtcaca ttcatcctcc atgtgcgtta
     1501 agcaggagcc gcatgaggct tccctggctc ctttcacccc ttcctcactg gcagtgtcgg
     1561 gccttgcgga actgttgccc ctccagccca gcgtgtcagt agacgcctcc accccctgct
     1621 acggtgccta tgcccatcat gcgcccagct actgccagta tgcaagccag cctattatag
     1681 caggtcgaga gatggcgagc acgaccctac caggataccc acctcacgtt ccccccactg
     1741 ggcagggcag ctaccccacc tctacacttg ctggaatggt gcctggaagc gacttttcag
     1801 gaaatcccta ctctcacccg cagtacacaa cttacaatga agcttggcgg ttcagcaacc
     1861 ccgcgttatt aatgccgcat cccggggctc cgggcctccc actgctgcca ctgcctatga
     1921 ccgccactag ttaccatcgc agcccagtca aactgcagga ccacggccgc ggcctccata
     1981 tcgtacccgt ctgaatggtc agagggattg aagatggata cgccatcttc actttcatgg
     2041 agccgagatc cgatttggag ggtcaagcaa cagcggacat ccactacatt ccccctttgg
     2101 caccatcact gaactatttc ctgaaagact ttgaaagatt ctacgaaaat atatatatta
     2161 tacgagatat aaaacaagac gaaccgtgtg aagaactacg aagtaaacaa ttgatgtgct
     2221 gttgtttttt ttttctctcc atttttcccc cattctctct caatcaatca aatacattcc
     2281 tttacatact gtatttagca tcgctaacac acacaacaca cacgcaaggt tgcctgaggc
     2341 ctttacatca tttcactagt gtcttacctc tcacggacgt gtcagaaaac tgcagtattg
     2401 ctccattttc tgtcaaacag acaagtgtaa ctgttttaga agccatctct ctgactcgtg
     2461 gtatgaagct accaacattt tctgtgatac acaatcaaaa acgggggaag aacaaaaaaa
     2521 agaagattaa aacaggtcag ttgatgtatg tgacctgaaa agaaaaccgt atattaaatt
     2581 attgttttgg tttcgctgat ggtttgtgtg cgtgtgtgca tttgtgtgtc atacattttc
     2641 gggatactca ttatcggtgc cgctattttc ttgtttgcac tattttgcat tactggattt
     2701 ataagtacaa ctgaattacg acttttgtca gatgttatat ttaagcaaaa ggaatcgaga
     2761 aagcaacgca acgtcgaaca aaaaatacac ttgctgtatg ttaggaacta gcctttatct
     2821 gtcattcagt aaagcgtttt tgtaactgag accgaacgac tggctcagta ccaaagtaat
     2881 cattagcagt cagttttaca agttcaacaa atgccttaca gcttttttta ttattattta
     2941 atttttttta tggtttggct ttggtcctga gaggtagaca tgcatgtaac ccttctgtgt
     3001 ggtggaacaa aacgcgagga tagaaatgga aacggttcat acatacgctc ctggaaatgt
     3061 aaagtgaatg tactttatac cacgtttgcc aaagacttag tttgatattt aatattttat
     3121 ttgctgtatc tgtcaataaa acagtattat gttttaatag tagtcaatac tgattgtatg
     3181 tggtaatgtt gaagaaaaag gaaaacgatc catatccccc ctcctgccca acacacagcg
     3241 atgtacacat taaaaaaagg tgaattctgt tactcaaagg tatgtcattt gcaacaaact
     3301 gctgctttgt agaatgattt tgtgtataat gtgaaaacaa ttcttcgatg tatataagat
     3361 cacctacatt tcaccattgc agtatcgtac taatttactg attccatttg tagatatgag
     3421 aattgaaaga agaagaaaaa aaagattgac attacatttg tgtcttcaat gtgttgtgct
     3481 tttgcagaga cgcacaacta aaagtttgga accgccgtgg ttcggtgggt ttcagatgct
     3541 gtcaccacat gtgcggctgt ttgtatgttt tgttttggtt cacttttact tgttcatact
     3601 gtttaagtct ctatgcaaat caagtaaaat ggtattctgt attctccttt attactgcgt
     3661 tcagttttac ccttcatttt aaatcatgcc taaatcctgt attgaggata atcctgtaga
     3721 cgcaaacaaa tacatttcac atgcctgggt ttgtggattg tttttgtact ttggccctta
     3781 agagttgaac acaacacttt agaattgttt tttttttttt tttaaatgtt aagttaaagt
     3841 tacattactg cagatgacac aaaatgtatg gcatgcaaag gaaaaaatga caacaaataa
     3901 tataactata cttaaattta tcgtacacac agtacaacca ctagttctaa ctcacacaaa
     3961 acagaaaaaa tatatattat ttgcatattt ttcattttat ttccatatcc aggttaaact
     4021 tttggaatga agattctaac cctgcactca ccgcaatcca gatatgccta tggaaacatt
     4081 tacttgacag ttttccccta aacaagccaa cagcagcaga ggttaaagca gaggctcctt
     4141 tcattaaata atgcaaaata tgtataacaa gcataatctg ttaagatcat aaaactaatc
     4201 catgatgaac aaatgtaaca aaaagcaaca tggcctcagc caacactatc ccacttctgt
     4261 ccagttctct ctctctattt gtgcatatca gaaataaatt tttttctatg tca
//
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