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    tfec transcription factor EC [ Alosa sapidissima (American shad) ]

    Gene ID: 121697740, updated on 12-Sep-2024

    Summary

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    Gene symbol
    tfec
    Gene description
    transcription factor EC
    See related
    EnsemblRapid:ENSASDG00000033039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa sapidissima
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    zebrafish all
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    Genomic context

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    See tfec in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fAloSap1.pri (GCF_018492685.1) 22 NC_055978.1 (19461985..19525187)

    Chromosome 22 - NC_055978.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121697182 Neighboring gene uncharacterized LOC121697178 Neighboring gene uncharacterized LOC121697181 Neighboring gene tubulin tyrosine ligase-like family, member 12 Neighboring gene MyoD family inhibitor domain containing Neighboring gene forkhead box P2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055978.1 Chromosome 22 Reference fAloSap1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAloSap1.pri Primary Assembly

    Genomic

    1. NC_055978.1 Reference fAloSap1.pri Primary Assembly

      Range
      19461985..19525187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042079392.1 → XP_041935326.1  transcription factor EC isoform X3

      Conserved Domains (1) summary
      cd18925
      Location:232 → 316
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    2. XM_042079390.1 → XP_041935324.1  transcription factor EC isoform X1

      Conserved Domains (1) summary
      cd18925
      Location:266 → 350
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    3. XM_042079393.1 → XP_041935327.1  transcription factor EC isoform X4

      Conserved Domains (1) summary
      cd18925
      Location:207 → 291
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    4. XM_042079391.1 → XP_041935325.1  transcription factor EC isoform X2

      Conserved Domains (1) summary
      cd18925
      Location:241 → 325
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    5. XM_042079395.1 → XP_041935329.1  transcription factor EC isoform X6

      Related
      ENSASDP00000009037.1, ENSASDT00000036019.1
      Conserved Domains (1) summary
      cd18925
      Location:181 → 265
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    6. XM_042079396.1 → XP_041935330.1  transcription factor EC isoform X7

      Related
      ENSASDP00000046890.1, ENSASDT00000036021.1
      Conserved Domains (1) summary
      cd18925
      Location:180 → 264
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    7. XM_042079394.1 → XP_041935328.1  transcription factor EC isoform X5

      Conserved Domains (1) summary
      cd18925
      Location:182 → 266
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    8. XM_042079397.1 → XP_041935331.1  transcription factor EC isoform X8

      Related
      ENSASDP00000046891.1, ENSASDT00000036022.1
      Conserved Domains (1) summary
      cd18925
      Location:157 → 241
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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