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    Translation initiation factor SUI1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835566, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation initiation factor SUI1 family protein
    Primary source
    TAIR:AT5G54760
    Locus tag
    AT5G54760
    See related
    Araport:AT5G54760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.2; MBG8_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (22243800..22245810)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Trypsin family protein Neighboring gene Transport protein particle (TRAPP) component Neighboring gene thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125964.1
    NM_001203611.1
    NM_001345099.1
    NM_124857.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Translation initiation factor SUI1 family protein
    NP_001119436.1
    • Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190540.1
    • Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1).
    NP_200287.1
    • Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22243800..22245810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203611.1 → NP_001190540.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190540.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDM2, A0A384LKP8, Q9FFV1
      Conserved Domains (1) summary
      TIGR01160
      Location:5 → 113
      SUI1_MOF2; translation initiation factor SUI1, eukaryotic

    2. NM_124857.5 → NP_200287.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200287.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDM2, A0A384LKP8, Q9FFV1
      Conserved Domains (1) summary
      TIGR01160
      Location:5 → 113
      SUI1_MOF2; translation initiation factor SUI1, eukaryotic

    3. NM_001125964.1 → NP_001119436.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119436.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDM2, A0A384LKP8, Q9FFV1
      Conserved Domains (1) summary
      TIGR01160
      Location:5 → 113
      SUI1_MOF2; translation initiation factor SUI1, eukaryotic

    4. NM_001345099.1 → NP_001331594.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDM2, A0A384LKP8, Q9FFV1
      Conserved Domains (1) summary
      TIGR01160
      Location:5 → 113
      SUI1_MOF2; translation initiation factor SUI1, eukaryotic
    Nucleotide Protein
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