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    helicase with zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819250, updated on 18-Sep-2024

    Summary

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    Official Full Name
    helicase with zinc finger protein
    Primary source
    TAIR:AT2G46420
    Locus tag
    AT2G46420
    See related
    Araport:AT2G46420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11C10.11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (19053470..19057162)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 46 Neighboring gene Homeodomain-like superfamily protein Neighboring gene cyclic nucleotide gated channel 3 Neighboring gene cyclic nucleotide-gated channels

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125064.1
    NM_001337190.1
    NM_130206.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    helicase with zinc finger protein
    NP_001118536.1
    • Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G61700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_566074.1
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G61700.1); Has 251 Blast hits to 249 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19053470..19057162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130206.3 → NP_566074.1  helicase with zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566074.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVR0, A0A384KXW2, A0A7G2EEH2, Q940Y4, Q9SKD8
      Conserved Domains (1) summary
      TIGR01589
      Location:52 → 108
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    2. NM_001337190.1 → NP_001323638.1  helicase with zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVR0, A0A384KXW2, A0A7G2EEH2, Q940Y4, Q9SKD8
      Conserved Domains (1) summary
      TIGR01589
      Location:52 → 108
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    3. NM_001125064.1 → NP_001118536.1  helicase with zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118536.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EEH2, B3H5Y3
      Conserved Domains (1) summary
      TIGR01589
      Location:52 → 108
      A_thal_3526; uncharacterized plant-specific domain TIGR01589
    Nucleotide Protein
    Heading Accession and Version

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