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Conserved domains on  [gi|18407071|ref|NP_566074|]
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helicase with zinc finger protein [Arabidopsis thaliana]

Protein Classification

A_thal_3526 family protein( domain architecture ID 10019374)

A_thal_3526 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
A_thal_3526 TIGR01589
uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized ...
 52-108 2.59e-29

uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.


:

Pssm-ID: 130650  Cd Length: 57  Bit Score: 107.60  E-value: 2.59e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18407071    52 IELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYYIR 108
Cdd:TIGR01589   1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKTH 57
 
Name Accession Description Interval E-value
A_thal_3526 TIGR01589
uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized ...
 52-108 2.59e-29

uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.


Pssm-ID: 130650  Cd Length: 57  Bit Score: 107.60  E-value: 2.59e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18407071    52 IELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYYIR 108
Cdd:TIGR01589   1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKTH 57
A_thal_3526 pfam09713
Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins ...
 57-106 4.64e-26

Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.


Pssm-ID: 401595  Cd Length: 51  Bit Score: 98.43  E-value: 4.64e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18407071    57 NLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYY 106
Cdd:pfam09713   1 NLIERCLQLYMSKEETVRALQKQANIQPVFTSTVWKELEKENPEFFKAYY 50
 
Name Accession Description Interval E-value
A_thal_3526 TIGR01589
uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized ...
 52-108 2.59e-29

uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.


Pssm-ID: 130650  Cd Length: 57  Bit Score: 107.60  E-value: 2.59e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18407071    52 IELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYYIR 108
Cdd:TIGR01589   1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKTH 57
A_thal_3526 pfam09713
Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins ...
 57-106 4.64e-26

Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.


Pssm-ID: 401595  Cd Length: 51  Bit Score: 98.43  E-value: 4.64e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18407071    57 NLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYY 106
Cdd:pfam09713   1 NLIERCLQLYMSKEETVRALQKQANIQPVFTSTVWKELEKENPEFFKAYY 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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