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    dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824641, updated on 18-Sep-2024

    Summary

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    Official Full Name
    dentin sialophosphoprotein-like protein
    Primary source
    TAIR:AT3G54760
    Locus tag
    AT3G54760
    See related
    Araport:AT3G54760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20269024..20272504, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transcription repressor Neighboring gene zein-binding protein (Protein of unknown function, DUF593) Neighboring gene downstream neighbor of Son Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin. Zhou JX, et al. Plant J, 2021 Jul. PMID 33942410
    2. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115333.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    dentin sialophosphoprotein-like protein
    NP_001190094.1
    • dentin sialophosphoprotein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1).
    NP_191036.1
    • dentin sialophosphoprotein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 25330 Blast hits to 15408 proteins in 1388 species: Archae - 237; Bacteria - 6371; Metazoa - 7552; Fungi - 2715; Plants - 1153; Viruses - 230; Other Eukaryotes - 7072 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20269024..20272504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203165.2 → NP_001190094.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190094.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMS0, A0A7G2EXV1, F4JE18
      Conserved Domains (2) summary
      smart00360
      Location:674 → 729
      RRM; RNA recognition motif
      COG5271
      Location:78 → 455
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

    2. NM_115333.6 → NP_191036.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191036.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMS0, A0A654FGN0, Q9M1S4
      Conserved Domains (2) summary
      smart00360
      Location:705 → 760
      RRM; RNA recognition motif
      COG5271
      Location:78 → 486
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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