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Conserved domains on  [gi|334185990|ref|NP_001190094|]
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dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

Protein Classification

RNA recognition motif domain-containing protein( domain architecture ID 11266229)

RNA recognition motif (RRM) domain-containing protein similar to Arabidopsis thaliana serine/arginine-rich splicing factor RS31A, which is probably involved in intron recognition and spliceosome assembly

Gene Ontology:  GO:0003723
SCOP:  3000110

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PTZ00341 super family cl31759
Ring-infected erythrocyte surface antigen; Provisional
90-227 7.27e-04

Ring-infected erythrocyte surface antigen; Provisional


The actual alignment was detected with superfamily member PTZ00341:

Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 43.24  E-value: 7.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   90 DETAKSEVKSKSGATHETAGEEETENSvanEATDEKATCEVEDNggvcdAEQDVEtENFQLNPVHGETLSVAEDKADQEK 169
Cdd:PTZ00341 1008 EENVEENIEENVEEYDEENVEEVEENV---EEYDEENVEEIEEN-----AEENVE-ENIEENIEEYDEENVEEIEENIEE 1078
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334185990  170 ETTKKIEKDINEMEVDSKQEDEENETEDAKHSesaqvPEESTKLSKEETDEENQKEEN 227
Cdd:PTZ00341 1079 NIEENVEENVEENVEEIEENVEENVEENAEEN-----AEENAEENAEEYDDENPEEHN 1131
rad2 super family cl36701
DNA excision repair protein (rad2); All proteins in this family for which functions are known ...
96-466 2.17e-03

DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


The actual alignment was detected with superfamily member TIGR00600:

Pssm-ID: 273166 [Multi-domain]  Cd Length: 1034  Bit Score: 41.42  E-value: 2.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    96 EVKSKSGATHETAGEEETENSVANEATDEKATCE-VEDNGGVCDAEQDVETENFQLNPVHGETLSVAEDKADQEKETTKK 174
Cdd:TIGR00600  407 EDKKVSASSDDQASPSKKTKMLLISRIEVEDDDLdYLDQGEGIPLMAALQLSSVNSKPEAVASTKIAREVTSSGHEAVPK 486
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   175 IEKDINEMEVDSKQEDEENETEDAKhseSAQVPEESTKLSKEETDEENQKEENGvamEIDGVAGEHVEKVvkvgsgSDNA 254
Cdd:TIGR00600  487 AVQSLLLGATNDSPIPSEFTILDRK---SELSIERTVKPVSSEFGLPSQREDKL---AIPTEGTQNLQGI------SDHP 554
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   255 cnesagASMVQTQDVPIAEADNNESNVVKKMEiDERKDNADMTSDLTGTI--ESADSAIPNSPTEDAAPGNIQDLKTETG 332
Cdd:TIGR00600  555 ------EQFEFQNELSPLETKNNESNLSSDAE-TEGSPNPEMPSWSSVTVpsEALDNYETTNPSNAKEVRNFAETGIQTT 627
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   333 NVSLKEDKKVTDMAEDVVTADIETESNEARVG------------VGAESPAAATDCSKETSDATLGSEENQQDKDHQCL- 399
Cdd:TIGR00600  628 NVGESADLLLISNPMEVEPMESEKEESESDGSfievdsvsstleLQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLl 707
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185990   400 -DKKTADVQDTMIEE----DDITHEApsfdpnQKENAEMEENHNNFVYADDEAgSDVKTNGVKRKADVLSED 466
Cdd:TIGR00600  708 fDESEEDNIVGMIEEekdaDDFKNEW------QDISLEELEALEANLLAEQNS-LKAQKQQQKRIAAEVTGQ 772
RRM smart00360
RNA recognition motif;
674-729 2.95e-03

RNA recognition motif;


:

Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 36.80  E-value: 2.95e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   674 EKSLSKMFRHFGPIQELRTEVDREKNRAR----VVFRKGADAEVAYNSAGRFNIFGTKVV 729
Cdd:smart00360  13 EEELRELFSKFGKVESVRLVRDKETGKSKgfafVEFESEEDAEKALEALNGKELDGRPLK 72
 
Name Accession Description Interval E-value
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
90-227 7.27e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 43.24  E-value: 7.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   90 DETAKSEVKSKSGATHETAGEEETENSvanEATDEKATCEVEDNggvcdAEQDVEtENFQLNPVHGETLSVAEDKADQEK 169
Cdd:PTZ00341 1008 EENVEENIEENVEEYDEENVEEVEENV---EEYDEENVEEIEEN-----AEENVE-ENIEENIEEYDEENVEEIEENIEE 1078
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334185990  170 ETTKKIEKDINEMEVDSKQEDEENETEDAKHSesaqvPEESTKLSKEETDEENQKEEN 227
Cdd:PTZ00341 1079 NIEENVEENVEENVEEIEENVEENVEENAEEN-----AEENAEENAEEYDDENPEEHN 1131
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
2-234 1.00e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990     2 EEPREESEAVRDcsepmEEAGKGSGLSSKTETLVDEDANTDLGVSDKNPNDGGLATVDVDDD----DDVKRTDAVTEIEC 77
Cdd:TIGR00927  649 GERPTEAEGENG-----EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADhkgeTEAEEVEHEGETEA 723
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    78 EGDTGTVEVKLNDETAKSEVKSKSGATHETAGEEETENSVANEATDEKATCEVEDNGGVCDAEQDVE----TENFQLNPV 153
Cdd:TIGR00927  724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEmkgdEGAEGKVEH 803
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   154 HGETLSVAEDKADQEKETTKKI--------EKDIN-----EMEVDSKQEDEENETEDAKHSESAQVPEESTKLSKEETDE 220
Cdd:TIGR00927  804 EGETEAGEKDEHEGQSETQADDtevkdetgEQELNaenqgEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEE 883
                          250
                   ....*....|....
gi 334185990   221 ENQKEENGVAMEID 234
Cdd:TIGR00927  884 EEEEEENEEPLSLE 897
rad2 TIGR00600
DNA excision repair protein (rad2); All proteins in this family for which functions are known ...
96-466 2.17e-03

DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273166 [Multi-domain]  Cd Length: 1034  Bit Score: 41.42  E-value: 2.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    96 EVKSKSGATHETAGEEETENSVANEATDEKATCE-VEDNGGVCDAEQDVETENFQLNPVHGETLSVAEDKADQEKETTKK 174
Cdd:TIGR00600  407 EDKKVSASSDDQASPSKKTKMLLISRIEVEDDDLdYLDQGEGIPLMAALQLSSVNSKPEAVASTKIAREVTSSGHEAVPK 486
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   175 IEKDINEMEVDSKQEDEENETEDAKhseSAQVPEESTKLSKEETDEENQKEENGvamEIDGVAGEHVEKVvkvgsgSDNA 254
Cdd:TIGR00600  487 AVQSLLLGATNDSPIPSEFTILDRK---SELSIERTVKPVSSEFGLPSQREDKL---AIPTEGTQNLQGI------SDHP 554
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   255 cnesagASMVQTQDVPIAEADNNESNVVKKMEiDERKDNADMTSDLTGTI--ESADSAIPNSPTEDAAPGNIQDLKTETG 332
Cdd:TIGR00600  555 ------EQFEFQNELSPLETKNNESNLSSDAE-TEGSPNPEMPSWSSVTVpsEALDNYETTNPSNAKEVRNFAETGIQTT 627
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   333 NVSLKEDKKVTDMAEDVVTADIETESNEARVG------------VGAESPAAATDCSKETSDATLGSEENQQDKDHQCL- 399
Cdd:TIGR00600  628 NVGESADLLLISNPMEVEPMESEKEESESDGSfievdsvsstleLQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLl 707
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185990   400 -DKKTADVQDTMIEE----DDITHEApsfdpnQKENAEMEENHNNFVYADDEAgSDVKTNGVKRKADVLSED 466
Cdd:TIGR00600  708 fDESEEDNIVGMIEEekdaDDFKNEW------QDISLEELEALEANLLAEQNS-LKAQKQQQKRIAAEVTGQ 772
RRM smart00360
RNA recognition motif;
674-729 2.95e-03

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 36.80  E-value: 2.95e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   674 EKSLSKMFRHFGPIQELRTEVDREKNRAR----VVFRKGADAEVAYNSAGRFNIFGTKVV 729
Cdd:smart00360  13 EEELRELFSKFGKVESVRLVRDKETGKSKgfafVEFESEEDAEKALEALNGKELDGRPLK 72
 
Name Accession Description Interval E-value
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
90-227 7.27e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 43.24  E-value: 7.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   90 DETAKSEVKSKSGATHETAGEEETENSvanEATDEKATCEVEDNggvcdAEQDVEtENFQLNPVHGETLSVAEDKADQEK 169
Cdd:PTZ00341 1008 EENVEENIEENVEEYDEENVEEVEENV---EEYDEENVEEIEEN-----AEENVE-ENIEENIEEYDEENVEEIEENIEE 1078
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334185990  170 ETTKKIEKDINEMEVDSKQEDEENETEDAKHSesaqvPEESTKLSKEETDEENQKEEN 227
Cdd:PTZ00341 1079 NIEENVEENVEENVEEIEENVEENVEENAEEN-----AEENAEENAEEYDDENPEEHN 1131
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
2-234 1.00e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990     2 EEPREESEAVRDcsepmEEAGKGSGLSSKTETLVDEDANTDLGVSDKNPNDGGLATVDVDDD----DDVKRTDAVTEIEC 77
Cdd:TIGR00927  649 GERPTEAEGENG-----EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADhkgeTEAEEVEHEGETEA 723
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    78 EGDTGTVEVKLNDETAKSEVKSKSGATHETAGEEETENSVANEATDEKATCEVEDNGGVCDAEQDVE----TENFQLNPV 153
Cdd:TIGR00927  724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEmkgdEGAEGKVEH 803
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   154 HGETLSVAEDKADQEKETTKKI--------EKDIN-----EMEVDSKQEDEENETEDAKHSESAQVPEESTKLSKEETDE 220
Cdd:TIGR00927  804 EGETEAGEKDEHEGQSETQADDtevkdetgEQELNaenqgEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEE 883
                          250
                   ....*....|....
gi 334185990   221 ENQKEENGVAMEID 234
Cdd:TIGR00927  884 EEEEEENEEPLSLE 897
rad2 TIGR00600
DNA excision repair protein (rad2); All proteins in this family for which functions are known ...
96-466 2.17e-03

DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273166 [Multi-domain]  Cd Length: 1034  Bit Score: 41.42  E-value: 2.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    96 EVKSKSGATHETAGEEETENSVANEATDEKATCE-VEDNGGVCDAEQDVETENFQLNPVHGETLSVAEDKADQEKETTKK 174
Cdd:TIGR00600  407 EDKKVSASSDDQASPSKKTKMLLISRIEVEDDDLdYLDQGEGIPLMAALQLSSVNSKPEAVASTKIAREVTSSGHEAVPK 486
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   175 IEKDINEMEVDSKQEDEENETEDAKhseSAQVPEESTKLSKEETDEENQKEENGvamEIDGVAGEHVEKVvkvgsgSDNA 254
Cdd:TIGR00600  487 AVQSLLLGATNDSPIPSEFTILDRK---SELSIERTVKPVSSEFGLPSQREDKL---AIPTEGTQNLQGI------SDHP 554
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   255 cnesagASMVQTQDVPIAEADNNESNVVKKMEiDERKDNADMTSDLTGTI--ESADSAIPNSPTEDAAPGNIQDLKTETG 332
Cdd:TIGR00600  555 ------EQFEFQNELSPLETKNNESNLSSDAE-TEGSPNPEMPSWSSVTVpsEALDNYETTNPSNAKEVRNFAETGIQTT 627
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   333 NVSLKEDKKVTDMAEDVVTADIETESNEARVG------------VGAESPAAATDCSKETSDATLGSEENQQDKDHQCL- 399
Cdd:TIGR00600  628 NVGESADLLLISNPMEVEPMESEKEESESDGSfievdsvsstleLQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLl 707
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185990   400 -DKKTADVQDTMIEE----DDITHEApsfdpnQKENAEMEENHNNFVYADDEAgSDVKTNGVKRKADVLSED 466
Cdd:TIGR00600  708 fDESEEDNIVGMIEEekdaDDFKNEW------QDISLEELEALEANLLAEQNS-LKAQKQQQKRIAAEVTGQ 772
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
71-295 2.64e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.52  E-value: 2.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990    71 AVTEIECEGDTGTVEVKLNDETA-----KSEVKSKSGATHETAGEEETENSVANEATDEKatcevEDNGGVCDAEQDVET 145
Cdd:TIGR00927  634 DVAEAEHTGERTGEEGERPTEAEgengeESGGEAEQEGETETKGENESEGEIPAERKGEQ-----EGEGEIEAKEADHKG 708
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   146 ENFQLNPVHGETLSVAEDKADQEKETTKKIEKDINEMEVDSkQEDEENETEdAKHSESAQVPEESTKLSKEETDEENQKE 225
Cdd:TIGR00927  709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEA-EGKHEVETE-GDRKETEHEGETEAEGKEDEDEGEIQAG 786
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   226 ENGvamEIDGVAGEHVEKVVKVGSGSDNACNESAGASMVQTQDVPIAEADNNESNVVKKMEIDERKDNAD 295
Cdd:TIGR00927  787 EDG---EMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVD 853
RRM smart00360
RNA recognition motif;
674-729 2.95e-03

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 36.80  E-value: 2.95e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185990   674 EKSLSKMFRHFGPIQELRTEVDREKNRAR----VVFRKGADAEVAYNSAGRFNIFGTKVV 729
Cdd:smart00360  13 EEELRELFSKFGKVESVRLVRDKETGKSKgfafVEFESEEDAEKALEALNGKELDGRPLK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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