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    MYB16 myb domain protein 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831383, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB16
    Official Full Name
    myb domain protein 16
    Primary source
    TAIR:AT5G15310
    Locus tag
    AT5G15310
    See related
    Araport:AT5G15310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMIXTA; ATMYB16; F8M21.200; F8M21_200; myb domain protein 16
    Summary
    Member of the R2R3 factor gene family.
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    Genomic context

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    See MYB16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4974671..4976470)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ATP synthase E chain Neighboring gene SPX domain-containing protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions. Yang SL, et al. Plant Cell, 2022 Jan 20. PMID 34718767, Free PMC Article
    2. The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs. Oshima Y, et al. Plant Signal Behav, 2013 Nov. PMID 24169067, Free PMC Article
    3. Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Baumann K, et al. Development, 2007 May. PMID 17376813
    4. MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri. Oshima Y, et al. Plant Cell, 2013 May. PMID 23709630, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions.
      Title: Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions.
    2. These results suggest that MYB16 functions as a major regulator of cuticle formation in vegetative organs, in addition to its effect in reproductive organs and trichomes.
      Title: The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.
    3. Data indicate that the MIXTA-like MYB transcription factors MYB106 and MYB16, which regulate epidermal cell morphology, also regulate cuticle development coordinately with WIN1/SHN1.
      Title: MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001085120.1
    NM_001343397.1
    NM_121535.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cuticle pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cutin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 16
    NP_001078589.1
    • myb domain protein 16 (MYB16); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 106 (TAIR:AT3G01140.1); Has 8674 Blast hits to 8179 proteins in 471 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 457; Plants - 5850; Viruses - 4; Other Eukaryotes - 1711 (source: NCBI BLink).
    NP_197035.1
    • myb domain protein 16 (MYB16); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 106 (TAIR:AT3G01140.1); Has 8813 Blast hits to 8178 proteins in 474 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 488; Plants - 5846; Viruses - 4; Other Eukaryotes - 1754 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4974671..4976470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343396.1 → NP_001330733.1  myb domain protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBP8
      Conserved Domains (1) summary
      PLN03212
      Location:9 → 49
      PLN03212; Transcription repressor MYB5; Provisional

    2. NM_121535.4 → NP_197035.1  myb domain protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197035.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXF1
      UniProtKB/TrEMBL
      A0A178UJ10, A0A5S9Y4B7
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 131
      PLN03091; hypothetical protein; Provisional

    3. NM_001343397.1 → NP_001330734.1  myb domain protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBQ7
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 131
      PLN03091; hypothetical protein; Provisional

    4. NM_001085120.1 → NP_001078589.1  myb domain protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078589.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4B7, F4K9R6
      Conserved Domains (2) summary
      smart00717
      Location:14 → 63
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:14 → 61
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXF1.1

    Gene LinkOut

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