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Conserved domains on  [gi|1063732032|ref|NP_001330733|]
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myb domain protein 16 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 9-49 5.41e-16

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 74.73  E-value: 5.41e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKP 49
Cdd:PLN03212   99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 9-49 5.41e-16

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 74.73  E-value: 5.41e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKP 49
Cdd:PLN03212   99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 9-33 2.72e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.96  E-value: 2.72e-07
                          10        20
                  ....*....|....*....|....*
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHL 33
Cdd:pfam00249  22 RWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 9-33 1.14e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.10  E-value: 1.14e-06
                          10        20
                  ....*....|....*....|....*
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHL 33
Cdd:cd00167    21 NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
9-35 1.66e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 43.75  E-value: 1.66e-06
                           10        20
                   ....*....|....*....|....*..
gi 1063732032    9 RWSAIATHLPKRTDNEIKNYWNTHLKK 35
Cdd:smart00717  23 NWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 9-49 5.41e-16

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 74.73  E-value: 5.41e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKP 49
Cdd:PLN03212   99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139
PLN03091 PLN03091
hypothetical protein; Provisional
 9-52 2.16e-15

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 75.01  E-value: 2.16e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKPKNE 52
Cdd:PLN03091   88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 9-33 2.72e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.96  E-value: 2.72e-07
                          10        20
                  ....*....|....*....|....*
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHL 33
Cdd:pfam00249  22 RWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 9-33 1.14e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.10  E-value: 1.14e-06
                          10        20
                  ....*....|....*....|....*
gi 1063732032   9 RWSAIATHLPKRTDNEIKNYWNTHL 33
Cdd:cd00167    21 NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
9-35 1.66e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 43.75  E-value: 1.66e-06
                           10        20
                   ....*....|....*....|....*..
gi 1063732032    9 RWSAIATHLPKRTDNEIKNYWNTHLKK 35
Cdd:smart00717  23 NWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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