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    APC7 tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818495, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APC7
    Official Full Name
    tetratricopeptide repeat (TPR)-containing protein
    Primary source
    TAIR:AT2G39090
    Locus tag
    AT2G39090
    See related
    Araport:AT2G39090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anaphase-promoting complex 7; AtAPC7; T7F6.26; T7F6_26
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    Genomic context

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    See APC7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Sequence:
    Chromosome: 2; NC_003071.7 (16312657..16317390, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nodulin MtN3 family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036436.1
    NM_179978.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat (TPR)-containing protein
    NP_001031513.1
    • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: anaphase-promoting complex subunit 8 (TAIR:AT3G48150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850309.1
    • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: anaphase-promoting complex subunit 8 (TAIR:AT3G48150.1); Has 3516 Blast hits to 3050 proteins in 660 species: Archae - 166; Bacteria - 1649; Metazoa - 603; Fungi - 202; Plants - 185; Viruses - 0; Other Eukaryotes - 711 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16312657..16317390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179978.3 → NP_850309.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850309.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z2F9, Q2V418, Q8VY89, Q9ZUZ9
      UniProtKB/TrEMBL
      A0A178VSZ9, A0A178VUL0, A0A5S9X5E1
      Conserved Domains (2) summary
      TIGR02917
      Location:230 → 536
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:448 → 477
      TPR; TPR repeat [structural motif]

    2. NM_001036436.1 → NP_001031513.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031513.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUL0
      Conserved Domains (2) summary
      TIGR02917
      Location:225 → 510
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:448 → 477
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY89.1

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