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    transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830756, updated on 18-Sep-2024

    Summary

    Official Full Name
    transducin family protein / WD-40 repeat family protein
    Primary source
    TAIR:AT5G08560
    Locus tag
    AT5G08560
    See related
    Araport:AT5G08560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAH20.12; MAH20_12
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2770782..2774714, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase J Neighboring gene ncRNA Neighboring gene GC-rich sequence DNA-binding factor-like protein Neighboring gene Transcription initiation Spt4-like protein Neighboring gene Pyruvate kinase family protein Neighboring gene Calcium-binding EF hand family protein

    Bibliography

    Interactions

    General gene information

    NM_001085077.1
    NM_001343018.1
    NM_120942.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm PubMed 
    located_in cytoplasm  
    located_in nucleus PubMed 

    General protein information

    Preferred Names
    transducin family protein / WD-40 repeat family protein
    NP_001318513.1
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
    NP_196473.1
    • transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2770782..2774714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120942.3NP_196473.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196473.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNN2
      UniProtKB/TrEMBL
      A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
      Conserved Domains (4) summary
      smart00667
      Location:6396
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:97154
      CTLH; C-terminal to LisH motif
      cd00200
      Location:268559
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:277317
      7WD40; WD40 repeat [structural motif]
    2. NM_001085077.1NP_001078546.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078546.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNN2
      UniProtKB/TrEMBL
      A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
      Conserved Domains (4) summary
      smart00667
      Location:6396
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:97154
      CTLH; C-terminal to LisH motif
      cd00200
      Location:268559
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:277317
      7WD40; WD40 repeat [structural motif]
    3. NM_001343018.1NP_001318513.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNN2
      UniProtKB/TrEMBL
      A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
      Conserved Domains (4) summary
      smart00667
      Location:6396
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:97154
      CTLH; C-terminal to LisH motif
      cd00200
      Location:268559
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:277317
      7WD40; WD40 repeat [structural motif]
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