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    AMMECR1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818453, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AMMECR1 family
    Primary source
    TAIR:AT2G38710
    Locus tag
    AT2G38710
    See related
    Araport:AT2G38710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A23.9; T6A23_9
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16184259..16187273, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Gag-Pol polyprotein/retrotransposon Neighboring gene mevalonate diphosphate decarboxylase 1 Neighboring gene microtubule-associated protein 65-5 Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036432.2
    NM_001336722.1
    NM_001336723.1
    NM_129428.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AMMECR1 family
    NP_001031509.1
    • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565894.1
    • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 1012 Blast hits to 1010 proteins in 455 species: Archae - 211; Bacteria - 342; Metazoa - 168; Fungi - 130; Plants - 53; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16184259..16187273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129428.4 → NP_565894.1  AMMECR1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    2. NM_001336723.1 → NP_001325028.1  AMMECR1 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    3. NM_001336722.1 → NP_001325027.1  AMMECR1 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    4. NM_001036432.2 → NP_001031509.1  AMMECR1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031509.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVJ2.1

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