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    Y37E3.1 Tetratricopeptide repeat protein 5 OB fold domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171762, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y37E3.1
    Official Full Name
    Tetratricopeptide repeat protein 5 OB fold domain-containing protein
    Primary source
    WormBase:WBGene00021346
    Locus tag
    CELE_Y37E3.1
    See related
    AllianceGenome:WB:WBGene00021346
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human TTC5 (tetratricopeptide repeat domain 5). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y37E3.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003279.8 (2061667..2063998, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DUF5641 domain-containing protein Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC5 Neighboring gene Modifier of protein aggregation 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Tetratricopeptide repeat protein 5 OB fold domain-containing protein
    NP_490922.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2061667..2063998 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058521.6 → NP_490922.1  Tetratricopeptide repeat protein 5 OB fold domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490922.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BKU9
      Conserved Domains (4) summary
      sd00006
      Location:215 → 245
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:216 → 249
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:60 → 125
      TPR_11; TPR repeat
      pfam16669
      Location:276 → 394
      TTC5_OB; Tetratricopeptide repeat protein 5 OB fold domain
    Nucleotide Protein
    Heading Accession and Version

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